Gene detail

Gene detail information of Glyur001819s00039495

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	7.00E-33	disease resistance protein (TIR-NBS-LRR class), putative
NR	XP_007154567.1	5.59E-129	hypothetical protein PHAVU_003G129700g [Phaseolus vulgaris]
Swissprot	tr\|Q9SZ67\|WRK19_ARATH	2.00E-31	Probable WRKY transcription factor 19
trEMBL	tr\|V7CCD5\|V7CCD5_PHAVU	2.00E-129	Uncharacterized protein {ECO:0000313\|EMBL:ESW26561.1}

Sequence

Transcript Sequence

>Glyur001819s00039495.1
ATGGAAACAGCAATCATCAGAGGACAAGAGAGGTTGGGGAGGTTGGGATCCAATTTCAACAAGACACCTTATGGGAAGTTGAGGGTGGAGCTTGATGCTCAATGTGCTATTACCGTGCAACATGAGTTGAGGATGGAGCAGGATGGTCAGAGTCAGAACATATTCTTGTTGGGTGGATTAGACGCTCCTCATGATGTTGGGGAAGTAGAATTGGTTCAGATGAAATTCTTGTTGGACGCTTCAGGAAAGAATGAGGGAAGTAGTACAATTGAAGGAATAATGCTAGATCCCCCTACTCACGAAGAAGTGCATCGTTGGACAGATACTGCCTTCCAGAAGATGAAAAACCTTAGAATTCTGATTATTCGGAATACAACATTTTCAANAGGTCCTAGTTATTTACCAAATAGTCTACGGCTACTCAATTGGAAGGGGTACCCATCNAGGTCTTTACCACCTAATTTTCATCCCCAAAGAGTTGTTGATTTCAAGTTACCTCATAGTTCTCTGATTTTGGAAAAGCCATTTCAGAAATTTGAGGATTTGACATTCGTGAATCTCTCCCAGTGTCAATCCATAACTCAAATACCTGATGTNTCTGGAGCTATAAATTTAAGAGTATTGACACTTGAAAGGTGCCATAAAGTGGTAAGATTTGATAAATCCATAGGGTTTATGCCAAACCTTGTGTGTTTAAGTGCTTCAGAGTGTACCATGCTCAAGAGTTTTGTGCCAAGAATGTATTTGCCATCTCTCGAGGTTCTCTCATTTAACTTGTGCAAAAGACTTGAACATTTCCCTGAGGTAACACAAAAGATGGATAAGCCATTGAAGATTCGAATGATAGGTACTGCTATTAAGAAGTTTCCAGAGTCCATTGGTAACCTTACCGGGCTTGAATACTTGGACATGTCTAATTGCATAAGACTCAGTGATCTATCAAGTAGCTTCTTCTTATTGCCAAAACTTGCCACTTTAAAAGTTGATGGATGTTCTCAACTTGGAGAATCATTTAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01819	23468	25347	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001819s00039495.1	PF00560.28	LRR_1	299	317	0.033

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.431
SRR1783600	control	1.354
SRR1783602	moderate drought stress	0.690
SRR1811619	moderate drought stress	0.769

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.066
DRR006520	Root Summer glycyrrhizin high producing strain	0.812
DRR006521	Root Winter glycyrrhizin high producing strain	0.110
DRR006522	Root Winter glycyrrhizin high producing strain	0.248
DRR006523	Root Summer glycyrrhizin low producing strain	0.750
DRR006524	Root Summer glycyrrhizin low producing strain	1.040
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.214
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.389

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.062
SRR2868004	Drought Stress (root)	17.965
SRR2967015	Control (root)	6.804

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.907
SRR9715740	Leaf	0.976
SRR9715741	Leaf	1.732
SRR9715739	Root	1.968
SRR9715742	Root	10.842
SRR9715743	Root	8.134

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.546
SRR8749028	MeJA induced 9h	10.460
SRR8749029	MeJA induced 9h	7.109
SRR8749030	Uninduced	3.860
SRR8749031	Uninduced	3.102
SRR8749032	Uninduced	3.119

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.055
SRR8400027	Control - Root	7.345