Gene detail information of Glyur001818s00030082 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G11840.1 | 8.00E-68 | Protein of unknown function (DUF1230) |
| NR | XP_003589013.1 | 1.21E-115 | hypothetical protein MTR_1g016360 [Medicago truncatula] |
| Swissprot | tr|P51273|YCF36_PORPU | 6.00E-24 | Uncharacterized protein ycf36 |
| trEMBL | tr|G7IB80|G7IB80_MEDTR | 5.00E-116 | DUF1230 family protein {ECO:0000313|EMBL:AES59264.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01818 | 43810 | 46885 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001818s00030082.1 | PF06799.6 | DUF1230 | 10 | 109 | 1.60E-22 |
| Glyur001818s00030082.1 | PF06799.6 | DUF1230 | 148 | 209 | 4.00E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.660 |
| SRR1783600 | control | 0.655 |
| SRR1783602 | moderate drought stress | 4.400 |
| SRR1811619 | moderate drought stress | 4.724 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.121 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.444 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.654 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.479 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.566 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.467 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.265 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.848 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.851 |
| SRR2868004 | Drought Stress (root) | 10.343 |
| SRR2967015 | Control (root) | 18.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 30.788 |
| SRR9715740 | Leaf | 40.907 |
| SRR9715741 | Leaf | 27.319 |
| SRR9715739 | Root | 2.099 |
| SRR9715742 | Root | 3.613 |
| SRR9715743 | Root | 2.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.954 |
| SRR8749028 | MeJA induced 9h | 3.399 |
| SRR8749029 | MeJA induced 9h | 2.629 |
| SRR8749030 | Uninduced | 1.881 |
| SRR8749031 | Uninduced | 1.500 |
| SRR8749032 | Uninduced | 2.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.067 |
| SRR8400027 | Control - Root | 8.398 |