Gene detail information of Glyur001818s00030081 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26070.1 | 1.00E-80 | Protein of unknown function (DUF778) |
| NR | XP_004498900.1 | 2.43E-148 | PREDICTED: protein REVERSION-TO-ETHYLENE SENSITIVITY1-like [Cicer arietinum] |
| Swissprot | tr|F4ITL6|RTE1_ARATH | 4.00E-118 | Protein REVERSION-TO-ETHYLENE SENSITIVITY1 |
| trEMBL | tr|I3S7V1|I3S7V1_LOTJA | 8.00E-148 | Uncharacterized protein {ECO:0000313|EMBL:AFK36343.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01818 | 36257 | 41974 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001818s00030081.1 | PF05608.7 | DUF778 | 45 | 180 | 7.30E-49 |
| Glyur001818s00030081.2 | PF05608.7 | DUF778 | 45 | 180 | 7.30E-49 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.095 |
| SRR1783600 | control | 5.309 |
| SRR1783602 | moderate drought stress | 9.577 |
| SRR1811619 | moderate drought stress | 7.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.874 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.822 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.307 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.141 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.490 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.693 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.792 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.664 |
| SRR2868004 | Drought Stress (root) | 13.422 |
| SRR2967015 | Control (root) | 14.622 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.043 |
| SRR9715740 | Leaf | 4.267 |
| SRR9715741 | Leaf | 3.068 |
| SRR9715739 | Root | 3.998 |
| SRR9715742 | Root | 4.604 |
| SRR9715743 | Root | 4.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.400 |
| SRR8749028 | MeJA induced 9h | 33.312 |
| SRR8749029 | MeJA induced 9h | 28.494 |
| SRR8749030 | Uninduced | 20.947 |
| SRR8749031 | Uninduced | 36.221 |
| SRR8749032 | Uninduced | 32.930 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.852 |
| SRR8400027 | Control - Root | 22.879 |