Gene detail

Gene detail information of Glyur001818s00030078

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33000.2	6.00E-70	calcineurin B-like protein 10
NR	XP_004498906.1	1.89E-124	PREDICTED: calcineurin B-like protein 10-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q7FRS8\|CNBLA_ARATH	1.00E-85	Calcineurin B-like protein 10
trEMBL	tr\|G7IB87\|G7IB87_MEDTR	4.00E-122	Calcineurin B-like protein 4-1 {ECO:0000313\|EMBL:AES59271.1}

Sequence

Transcript Sequence

>Glyur001818s00030078.1
ATTTCTTGGATACTCATACATATAGATATGGTGGATTTATGTGGTCACAGGAGTGTCGTCATCTTNGTAGCTAGGAACAAACAGAGCCACAGCCAACCACAGCACACAACACTACGGAAGACTCTGTCTTTTCAGTTTNCACCAACATCCATTCATTCAACTCTCCACCATAGATCATTATAGTACNGTGCACTGCACTAACCGTCAACCCTTCATTCATTCATCATTATACCTTAATTGTACTAACCCAAATCCAGATAAAAAAACGTGACAAAACGAGACACCATCTTCTACAACTGAAACACAAACAATAATGCTGCAGCAACAGCACAGGNATTTCCAGAATCACCCTTCTCATCAGCGGCAGGAACATCCCACCATGCCCACAGATTCTCCCCAGGTGGCGTCGTGCATGTATGTGGCGTTGATGCCACTCATAGCTGTGATTGAGGCTTTGGTGTTTGCCGTTACAGGTTGTTTCNCCTATCGTCCTCTCCGAAGAATTGTTCACAACCACAATGAACCTGCTTCTTATACTGCNAAGGATTTCGCTCGCCTTGCTGACGAAACCACGTTTACTGTTAATGAAGTGGAGGCATTGCATGTTCTGTTCGAAAATTTAAGTAGCTCCCTGATTGATGATGGCTCGATTCACAAGGTGGAGCTTCAATTGGCAATATTTCAAAACCCAAATGGAGAAAATCTTTTCCTGGATCGAGTTTTTGACCTTTTTGACGAAAAGAGAAATGGTGCTATCGAGTTTGATGAATTTGTCCATGCGCTCAGTGTTTTCCATCCTTATGCCCCNATGGATGAAAAAATTGACTTTGCATTTAAGCTCTATGACCTGAGACAAACTGGGTTTATCGAGCCAGAGGAAGTCAAGCAAATGGTTGTAGCCATTTTGATGGAATCTGACATGAACCTTTCTGATGATCTTCTTCAAGCTATTGTTGACAAGGACAATGATGGTAAAATCAGTAAAGAAGATTGGAAAGCTTTTGTGATTCGAAATCCATCCCTGGATGTCACCTCTATGTTTCCTAGTTTTGTTTTCAAATCGGAGGCTGAATTTTGAGAAGAAAATGTGTTGTTTTGGTGTCAAGATGCTGTCTGTTTGAGGTGAAGAATTGGATGCCTCATTGCTGTAAAGGGTAATAAAGAGGTATTTTGTGGACAAACAAGCAGGGTCGACAACACTGCATAATTTCTGCGACCATACCCTGAAGCCACCAAGTTTTTTATGTTTTGTATGCTTGAAATTTGTAGCATATAATTCCTATATTTGACTATCTGCATGTGATCACATAAACCGAGTGCTGCTTGCTTTGCTGATTCAGGGAAAATGTATGTCTGCATTAATAGTTTCCTTGTACATAGAGTCAGAGGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01818	19453	23753	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001818s00030078.1	PF13405.1	EF-hand_6	133	158	0.00012
Glyur001818s00030078.1	PF13499.1	EF-hand_7	170	230	4.30E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.680
SRR1783600	control	0.607
SRR1783602	moderate drought stress	2.552
SRR1811619	moderate drought stress	2.125

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.010
DRR006520	Root Summer glycyrrhizin high producing strain	1.049
DRR006521	Root Winter glycyrrhizin high producing strain	2.985
DRR006522	Root Winter glycyrrhizin high producing strain	3.033
DRR006523	Root Summer glycyrrhizin low producing strain	2.527
DRR006524	Root Summer glycyrrhizin low producing strain	2.349
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.232
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.300

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.360
SRR2868004	Drought Stress (root)	0.214
SRR2967015	Control (root)	0.031

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.638
SRR9715740	Leaf	11.511
SRR9715741	Leaf	4.548
SRR9715739	Root	0.035
SRR9715742	Root	0.685
SRR9715743	Root	0.220

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.145
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.395
SRR8749031	Uninduced	0.098
SRR8749032	Uninduced	0.237

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.521
SRR8400027	Control - Root	0.842