Gene detail information of Glyur001812s00038592 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40910.1 | 3.00E-11 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | KEH34069.1 | 6.20E-26 | disease resistance protein (TIR-NBS-LRR class) [Medicago truncatula] |
| Swissprot | tr|P0DKH6|RPS6R_ARATH | 2.00E-12 | Disease resistance protein RPS6 {ECO:0000303|PubMed:19525323} |
| trEMBL | tr|A0A072UW66|A0A072UW66_MEDTR | 2.00E-26 | Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313|EMBL:KEH34069.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01812 | 20477 | 20803 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 37.566 |
| SRR1783600 | control | 41.712 |
| SRR1783602 | moderate drought stress | 4.418 |
| SRR1811619 | moderate drought stress | 5.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.611 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.038 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.036 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.257 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.201 |
| SRR2868004 | Drought Stress (root) | 2.957 |
| SRR2967015 | Control (root) | 1.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.203 |
| SRR9715740 | Leaf | 3.507 |
| SRR9715741 | Leaf | 5.915 |
| SRR9715739 | Root | 6.469 |
| SRR9715742 | Root | 14.266 |
| SRR9715743 | Root | 17.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.458 |
| SRR8749028 | MeJA induced 9h | 1.060 |
| SRR8749029 | MeJA induced 9h | 0.637 |
| SRR8749030 | Uninduced | 1.023 |
| SRR8749031 | Uninduced | 0.207 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.906 |
| SRR8400027 | Control - Root | 11.595 |