Gene detail

Gene detail information of Glyur001811s00040227.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G56960.1	2.00E-56	basic helix-loop-helix (bHLH) DNA-binding family protein
NR	XP_003595200.1	0	Transcription factor MYC4 [Medicago truncatula]
Swissprot	tr\|Q9LTS4\|BH041_ARATH	1.00E-77	Putative transcription factor bHLH041
trEMBL	tr\|G7IIK8\|G7IIK8_MEDTR	0	Basic helix loop helix (BHLH) DNA-binding family protein {ECO:0000313\|EMBL:AES65451.2}

Sequence

Transcript Sequence

>Glyur001811s00040227.1
CACCCTATGGAAGGTGTCTTCTCCCTCCCTGTAGCAGTCAGAACTGATTTCATCCACTCTCTAGTGCAGTCTTTTGGTTGCTCTTACATTTGTCTCTGGGCATATGATTCCATATCATCACCCAATCGTTTGTCCTTCTTGGATGGTTTCTACAATGTAAGAAACAACCAGCAACCAAGCTCTTCTTTGGGGAGTAGTGTAGCACAAGGGCTTTTTAATCAGTACCAGATCTTAACATTTGATGTCAATGATGACCGTGTTCCTGGACTAGCTTTTAGGAGTCAGAGTCCCTACCTAGAGCTGCAACAATTGGAACTTCTGGCACTGGCATCAACAGAAATACAAACACAATTCTATCAGGAAGCAGGGATTAAGGTTGACATTCAAACAGCACTGAGGAGTTTGTTTCCTGAGGATTTTTCAAGACAGAGCACAACCACCACCCAGCAGCAACAAATTGATCAGAGCAATAACCCACCTTCATCATCCAATTCATCTTCTCTGATATCAATATCCACTGCAGGTAGCCCTGAATACTCATCTCTAATATTCAGCAACATTAATCCAGCTGGCACCTCTCAACATCACTTTCCTCCTGAGAGCACTACCCTTGGAGGAGGAGCTGTAGTTCCCCCAATTATGAGACCTGTCTCAACTACAAGCCCACAACAACAACAGCAAGCCCTTCAACTACAACAAGCATTGGCTGCTCATCAAGTAACTCCAACTCCAAATCAAATATTTCCCACTACCTCAGAAAGTGAACATGATGCAATAATGAGAGCAATCCTTAATGTTATATCTTCTTCATCATCACCTTCTCCTCATCAAACTCAAACCCACCAAAACTGGCCTCATCATAATTATGTGGTACATCCAGAAGCTAGTGCATTCANGAGGTATATTAATAGACCTGCTGCAGCAGATAGAAGCCCCAACATCACAATAGGGTCCAATTTCAGGAGGCAGAGCCTGATGAAGAGGTCGTTTGCATTCTTTAGAAACTTGAATTTCATNAGGATGAGAGATCAACGCACTCAAGCAACACGTCCCTCTAGTACACAACTTCATCATATGATCTCAGAGCGAAGAAGGCGTGAGAAACTCAATGAGAATTTCCAAGCACTTCGATCACTTCTTCCTCCTGGAACTAAGAAAGACAAAGCCTCCATATTGATAACAGCAAAGGAGAAATTGAGTTCTTTGATGGCTGAAACTGACAAGCTAAGCAAAAGAAATAAGGAGTTGACGTTGGCAGCCAATANAGAATCTACAACTCGTGATGAGGAAATTACCAATAACAAAGCTAGCTTCTTGATCTTGTCGAATAATGAAAGATTCAATGTGCGAGTTTTGCATGTACCGGAATCAAGCTCATCGGAAGAGCCAATGGTGGACTTGCAAGTGAACGTGATGAGGGGACAAAATATTTCTCAAGTTGATATATTGATCCGCTTATTGGAATTCCTAAAACAGGTTCACCACGTGAGCTTGATTTCCATGGAAGCAACACAAGGGAATGATGCCCTTCATCATCAAATAACCTTCAGGCTAAGGATTACTCAGGGAAGTGAATGGGACGAGGATGCCTTCCAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTGGTACAGTACCAAGTGGACCAAAACCTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01811	37697	43253	+

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001811s00040227.1	PF00010.21	HLH	358	402	1.20E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.455
SRR1783600	control	1.272
SRR1783602	moderate drought stress	0.696
SRR1811619	moderate drought stress	0.681

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	3.171
DRR006524	Root Summer glycyrrhizin low producing strain	3.283
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.210
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.172

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.879
SRR2868004	Drought Stress (root)	13.596
SRR2967015	Control (root)	4.831

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.911
SRR9715740	Leaf	3.884
SRR9715741	Leaf	7.231
SRR9715739	Root	1.398
SRR9715742	Root	2.676
SRR9715743	Root	2.119

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.171
SRR8749028	MeJA induced 9h	0.075
SRR8749029	MeJA induced 9h	0.110
SRR8749030	Uninduced	3.852
SRR8749031	Uninduced	2.599
SRR8749032	Uninduced	0.975

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.645
SRR8400027	Control - Root	3.339