Gene detail information of Glyur001809s00037567 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G57990.1 | 7.00E-13 | ubiquitin-specific protease 23 |
| NR | XP_007154887.1 | 1.05E-41 | hypothetical protein PHAVU_003G156400g [Phaseolus vulgaris] |
| Swissprot | tr|Q9FPS4|UBP23_ARATH | 4.00E-14 | Ubiquitin carboxyl-terminal hydrolase 23 |
| trEMBL | tr|V7CDA8|V7CDA8_PHAVU | 4.00E-42 | Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01809 | 31364 | 37315 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 172.746 |
| SRR1783600 | control | 190.882 |
| SRR1783602 | moderate drought stress | 351.213 |
| SRR1811619 | moderate drought stress | 385.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 193.717 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 191.448 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 57.227 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 53.811 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 157.435 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 169.611 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.021 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.088 |
| SRR2868004 | Drought Stress (root) | 30.650 |
| SRR2967015 | Control (root) | 42.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 45.768 |
| SRR9715740 | Leaf | 50.087 |
| SRR9715741 | Leaf | 69.236 |
| SRR9715739 | Root | 27.151 |
| SRR9715742 | Root | 136.213 |
| SRR9715743 | Root | 113.870 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 49.340 |
| SRR8749028 | MeJA induced 9h | 10.005 |
| SRR8749029 | MeJA induced 9h | 40.188 |
| SRR8749030 | Uninduced | 13.011 |
| SRR8749031 | Uninduced | 13.018 |
| SRR8749032 | Uninduced | 32.556 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 89.482 |
| SRR8400027 | Control - Root | 100.962 |