Gene detail information of Glyur001808s00027714 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G27740.1 | 3.00E-41 | ATPase family associated with various cellular activities (AAA) |
| NR | XP_003604069.1 | 0 | Replication factor C subunit [Medicago truncatula] |
| COG | YP_003727587.1 | 3.00E-16 | replication factor C [Methanohalobium evestigatum Z-7303] |
| Swissprot | tr|Q8VXX4|RFC3_ARATH | 2.00E-44 | Replication factor C subunit 3 |
| trEMBL | tr|G7J8L1|G7J8L1_MEDTR | 0 | Replication factor C subunit, putative {ECO:0000313|EMBL:AES74320.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01808 | 23733 | 29676 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.761 |
| SRR1783600 | control | 1.747 |
| SRR1783602 | moderate drought stress | 2.391 |
| SRR1811619 | moderate drought stress | 2.322 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.477 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.680 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.188 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.916 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.450 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.360 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.378 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.418 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.176 |
| SRR2868004 | Drought Stress (root) | 27.976 |
| SRR2967015 | Control (root) | 28.656 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.633 |
| SRR9715740 | Leaf | 0.347 |
| SRR9715741 | Leaf | 2.531 |
| SRR9715739 | Root | 0.133 |
| SRR9715742 | Root | 1.124 |
| SRR9715743 | Root | 1.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.437 |
| SRR8749028 | MeJA induced 9h | 21.833 |
| SRR8749029 | MeJA induced 9h | 10.294 |
| SRR8749030 | Uninduced | 17.746 |
| SRR8749031 | Uninduced | 14.263 |
| SRR8749032 | Uninduced | 8.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.121 |
| SRR8400027 | Control - Root | 12.280 |