Gene detail information of Glyur001808s00027713 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G66740.1 | 6.00E-72 | ASF1 like histone chaperone |
| NR | XP_003522389.1 | 7.49E-128 | PREDICTED: histone chaperone ASF1B-like [Glycine max] |
| Swissprot | tr|Q9LS09|ASF1B_ARATH | 3.00E-98 | Histone chaperone ASF1B |
| trEMBL | tr|I1JSC8|I1JSC8_SOYBN | 3.00E-128 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G00380.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01808 | 19455 | 21156 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001808s00027713.1 | PF04729.8 | ASF1_hist_chap | 1 | 150 | 2.40E-63 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.072 |
| SRR1783600 | control | 9.999 |
| SRR1783602 | moderate drought stress | 9.257 |
| SRR1811619 | moderate drought stress | 8.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.730 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.408 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.514 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.985 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.318 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.046 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.446 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.353 |
| SRR2868004 | Drought Stress (root) | 22.831 |
| SRR2967015 | Control (root) | 22.762 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.218 |
| SRR9715740 | Leaf | 9.902 |
| SRR9715741 | Leaf | 10.595 |
| SRR9715739 | Root | 7.974 |
| SRR9715742 | Root | 7.605 |
| SRR9715743 | Root | 6.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 48.028 |
| SRR8749028 | MeJA induced 9h | 22.966 |
| SRR8749029 | MeJA induced 9h | 23.230 |
| SRR8749030 | Uninduced | 10.951 |
| SRR8749031 | Uninduced | 7.689 |
| SRR8749032 | Uninduced | 5.837 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.998 |
| SRR8400027 | Control - Root | 19.172 |