Gene detail information of Glyur001808s00027712 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32250.4 | 2.00E-130 | FAR1-related sequence 2 |
| NR | KHN19983.1 | 0 | Protein FAR1-RELATED SEQUENCE 2 [Glycine soja] |
| Swissprot | tr|Q3EBQ3|FRS2_ARATH | 2.00E-151 | Protein FAR1-RELATED SEQUENCE 2 |
| trEMBL | tr|K7KS99|K7KS99_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G00461.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01808 | 13725 | 17624 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001808s00027712.1 | PF03101.10 | FAR1 | 43 | 120 | 7.20E-10 |
| Glyur001808s00027712.1 | PF10551.4 | MULE | 196 | 266 | 7.30E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.243 |
| SRR1783600 | control | 2.098 |
| SRR1783602 | moderate drought stress | 2.266 |
| SRR1811619 | moderate drought stress | 2.162 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.527 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.259 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.743 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.687 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.299 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.630 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.985 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.733 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.556 |
| SRR2868004 | Drought Stress (root) | 6.183 |
| SRR2967015 | Control (root) | 5.497 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.989 |
| SRR9715740 | Leaf | 1.169 |
| SRR9715741 | Leaf | 1.659 |
| SRR9715739 | Root | 0.079 |
| SRR9715742 | Root | 1.694 |
| SRR9715743 | Root | 1.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.313 |
| SRR8749028 | MeJA induced 9h | 4.928 |
| SRR8749029 | MeJA induced 9h | 4.525 |
| SRR8749030 | Uninduced | 4.148 |
| SRR8749031 | Uninduced | 3.457 |
| SRR8749032 | Uninduced | 2.775 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.305 |
| SRR8400027 | Control - Root | 5.679 |