Gene detail

Gene detail information of Glyur001807s00034285

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12685.1	6.00E-42	Acid phosphatase/vanadium-dependent haloperoxidase-related protein
NR	XP_004488600.1	5.95E-143	PREDICTED: uncharacterized protein LOC101498665 [Cicer arietinum]
COG	NP_267155.1	5.00E-19	hypothetical protein L26878 [Lactococcus lactis subsp. lactis Il1403]
trEMBL	tr\|G7IT34\|G7IT34_MEDTR	2.00E-136	Acid phosphatase/vanadium-dependent haloperoxidase {ECO:0000313\|EMBL:AES66127.1}

Sequence

Transcript Sequence

>Glyur001807s00034285.1
GTCATTGTACAGCATGTGGCAAGGTAACCCATCCGCCACCCGTGTCATTTATCTTCCGCAAGCAATTGGTTTTTCTTTTGCCCCTATTATCCACTACTACTGGGTTGAAACTTCAAAGGCAGAGACCACTTTTCAAGTTTTCTTTTTCTCTTTTTGTATATTTCATTCGACTCCCTTTGCTGGAACGAAACAAATTCTAATTATATTATTTATTTGTAGTGTACAAATTGAGAGGAAAAAAAAACACAGAAAAGGTCATCTGGTTTTCCCTTACACACTGTGGCACCTTAACAGAGCATGTTTCATGGTTGACTAAAACGAGGTAGATACGATGTTGTTGCAGCAATCCATCTTCTGTGCAATTCCTCCCTCTCAGATTCCCTCTGTCTTCGGCCACTCACCCAAACAAAGGAACCCACTTCTTCACCAGCAAAATTTCCCCCTCCACTGTCCTAGAAAGTCCAAAGCCTCCACCTTCAGAATTTCTTCTCTAGGTGCTGGTTTGTCCCATGACATCACTCAAATTGCTCATAACAAGGTTCTGATTGCAGCTGGAGTTTCTATGGCCATTGGGCAGCTTTCTAAGCCATTCACTTCTGTGTTTCTGTATGGCAAAGAGTTTGATATCAAGGCCATTATTCAAGCTGGAGGGTTCCCATCATCACACTCTTCTGCTACAGTGGCTTGTGCAACATTCCTTGGCCTTGAGAGAGGCTTCTCAGATCCCATTTTTGGTCTTACAGTTGTGTATGCTGGTCTCATCATGTACGATGCTCAGGGTGTGAGAAGAGAAGTAGGGATTCATGCTAGGACACTGAACAAACTACTGCTCCAGATGCATGTCAACAACTCTTTACATTCCAAAGAGAGAGATGGTTTGATCAACTCTCAACCAAAAGTGGAAGGTCTTGAGAAGTCCCTTTTGTCCCTAGAAGCTACTACTTTGGAGCCACAACAGGAGAATGCACGTATATTGGTTAGATCAGGAAGCAAAATAAGGCAAACTGATGAGGAGATACTATCCTCTGGCTTCTCAGAGGATGCAAAAGATGTCTCAAAGTTGGTTGCTGATGGTATGCTCCCATTGAAAGAATCTATTGGCCATACTGAGATTGAAGTCATTGCTGGTGCTTTACTAGGCTTTTTAGTTGGTCTCGCTGTGTATAATTTCATGTAAAAATTCTTGGTTTTTTATGAATTATTTCATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01807	50196	53377	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001807s00034285.1	PF02681.9	DUF212	65	178	2.80E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.453
SRR1783600	control	3.547
SRR1783602	moderate drought stress	4.625
SRR1811619	moderate drought stress	4.633

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.182
DRR006520	Root Summer glycyrrhizin high producing strain	3.932
DRR006521	Root Winter glycyrrhizin high producing strain	2.475
DRR006522	Root Winter glycyrrhizin high producing strain	2.602
DRR006523	Root Summer glycyrrhizin low producing strain	3.303
DRR006524	Root Summer glycyrrhizin low producing strain	3.037
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.109
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.839

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.603
SRR2868004	Drought Stress (root)	8.572
SRR2967015	Control (root)	7.252

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.993
SRR9715740	Leaf	15.750
SRR9715741	Leaf	12.854
SRR9715739	Root	2.595
SRR9715742	Root	2.624
SRR9715743	Root	2.793

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.258
SRR8749028	MeJA induced 9h	9.216
SRR8749029	MeJA induced 9h	3.413
SRR8749030	Uninduced	5.647
SRR8749031	Uninduced	1.973
SRR8749032	Uninduced	1.373

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.233
SRR8400027	Control - Root	7.347