Gene detail

Gene detail information of Glyur001807s00034284

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G54350.1	0	ABC transporter family protein
NR	XP_004488598.1	0	PREDICTED: ABC transporter D family member 2, chloroplastic-like [Cicer arietinum]
COG	YP_005072615.1	2.00E-135	ABC transporter ATP-binding protein [Arthrospira platensis NIES-39]
Swissprot	tr\|Q6NLC1\|AB2D_ARATH	0	ABC transporter D family member 2, chloroplastic (Precursor)
trEMBL	tr\|G7IT31\|G7IT31_MEDTR	0	ABC transporter D family protein {ECO:0000313\|EMBL:AES66124.2}

Sequence

Transcript Sequence

>Glyur001807s00034284.1
GTTGTTTTTACATTTTCTGCGTGGCAACATGTGGATCACAGGCAATCCTACCGTTCGGATAATTCAGCAATAAGCTATGCGGCTCCCAAATTTTTCCTCACACTGACCACACTGCATACTCATCTATCAATCCATCNCCACCTTATTACAAATCCAAAGTCACTCACAACACAACCCAGTGTAACATACCAGCACGCCAAACTCAAAAGCCCTTCAATTTTCAGAAGCCATAGCCACAACCCACAAGGTACCAAAATAAAAAATGTGGGTTAAATCTTGGGTCTTTTAGCATTGATTATGCATATATTTCATAGTTTTGGACTAAATTAGGAATACCCAGAAAGGAGGAAGTGGAAAAAAAAATGATTTTGCTGACTCAACAACTAGCACATGCACACCCAATTTTTATCTTTTCCTCCACCTATAAGTCCAACCCTTCATTCCATCATCACCATGTTATGCACCTTCATCGCGGTTTGTGTGTGCTTACCCCATTTTCCCAAGTGCCCATCATGCCCATTCCCACTGGAAGAAGGCCTTGCAGGAGGAGGAGGAGGAATTGGAACAAATGTTTCTCTTCTTCTGAAACNACACAGGCTCCACTGCCACCTGACCCAGATAAGGAGCAAGTGGGAGAAGGGAGTGATGGTAGTTTAGCTGCACAGGGTGAGAGTCCTGATCTGCAGACGCTTTTTAGAAGGTTCTGGAAAGTGGCGGCTCCTTATTGGAGTTNAGATGACAAGGCCCAAGCAAGGTTGCAGCTTGCTGGTGTCTTNGCTCTCACTTTGGCTACCACTGGAATCAGTGTTGGCTTCAACTTCCTGGGGAGAGACTTCTATAATGCACTTGCTAACAAGGATCAAGAGCAATTTACAAAGCAGCTACTTTACTACTTGGGTGGCTTTGNTGGAGGAATTCCGTTTTTTGTATTGAGAGATTATGCAAGAGAAACTCTTTCATTGAGATGGAGGTCTTGGATGACGAGGTATTACATGGATCGTTATTTGAAGGATCAGACTTTCTATAAAATTCAGTCACAGTCAATTATTGATAATCCGGACCAGCGAATTGTTGATGATCTAAGTTCTTTCACCGGGACAGCCCTTTCTTTCTCCCTGACACTCTTTAATGCTGCCGTAGACTTGATCTCATTCAGTAACATCCTATATGGAATCTATCCTCCCCTCTTTGTTGTTCTTCTGTTATACTCTATTGGTGGAACAGCTATCAGTGTTTACCTTGGAAGGGGACTGGTGAGTTTAAATTTCTTGCAAGAGAAAAAGGAAGCAGACTTTCGTTATGGACTTGTACGGGTTCGGGAAAATGCTGAATCAATTGCTTTCTATGGTGGTGAAGATAGTGAAATGCAACTTCTTCTGCAGCGCTTCAAAAGTGCTTTCGAAAATCTGACCCAATTGTTGATTTCTTCTAGAAATCTGGATTTCTTCACCAGTGGCTACCGCTATGCCATTCAAGTTCTTCCTGCTGCTGTTGTTGCTCCCATGTATTTCTCCGGAAAAATCGAGTTTGGTGTCATCAATCAGTCAGTCTCTGCTTTTAATCATATCCTTGGTGACTTTTCCCTCATTGTGTACCAGTTCCAAGCTATAAGTGCTTTTTCTGCTGTTATTAATCGGTTAGGTGAATTTGATGATATTTTGGACAGAAGCAGCTCTAAATCTCTCTCTGGTGCTTTGGAAGACATAGATATTATATACAAAGATTTTAGGAGTTCATCTGTATTGGAATCTAATGGATCCACTCCACCAGAAAAACACGAAACAGTACTCGAGATAGAAAATTTGATTCTAAAGACACCAAGTGAAGCTACACTTATTAGAGACTTGTCATTGACAATCAAGGAAAAGGATAATTTACTGGTAATGGGACCAAGTGGAAGTGGCAAGACGTCTTTATTAAGAGCTATGGCTGGTCTATGGAAAACTGGAACCGGAAAGATCGTATACTACGTTAAAGGTGGAGAAGATCCTGAGAAATCCATTTGTTCGGATGTGAATACTCCTTTAGTAAATGTTGCTCGTGACACATGCGAAGTCCACGGAAAATCNATAGGCAGAAAATCCAGAATTTTTTTCCTACCTCAAAAGCCGTATATGGTTTTGGGTACTCTTCGTCAACAATTACTTTATCCAACTTGGGGTACTGATGTAGTTCCCACATCAGATAGTACTACAAAAAGAAATGTTCTTCCTTTCTTGTCAAAGTCAGATGATATGAATGATGAGCCTATGAAGCCAACAACAGAAGAGCTGATGAAGGTCNTAGAGGATGTCCGCCTTGGCTATTTATTGGCACGTTTCAGTTTGGATTCAACACATGAATGGTCTAGTGTTCTNTCTCTGGGGGAGCAGCAGCGCCTCGCATTTGCTCGCCTTTTGCTTTCGAAACCTCAATTGGTTTTATTGGATGAATCTACAAGTGCACTTGATGAAGCCAATGAGGTTCATTTGTACCAAAAGATTGGATCAGCAGGCATAACATACATCAGTGTTGGCCATAGATCAACCTTGTGCGACTACCACGACAGGATCTTACGCATATCCACAATCGATTCTAACAATGAAGAGCCAAATTGGTGCATTGAACCCACTAAACGCGATTCCTCTTTAAAATTCACAAATAATGTATGATTGTAGTGGGCTTTATAATTGATTGCAATGCATATGGATGTCAATCTATAGATTTTCCCAGGTAATTGGCTGTTGTAAACATTCAAAGTTTTATATACAGGTTGATAGAAGCACTAATAGAAGATTTTTTTTTTTAAGAAGTGTCAGACTTGCTGTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01807	40928	47441	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

GO:0042626 ATPase activity, coupled to transmembrane movement of substances

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001807s00034284.1	PF06472.10	ABC_membrane_2	109	383	1.40E-59
Glyur001807s00034284.1	PF00005.22	ABC_tran	493	693	1.30E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.139
SRR1783600	control	3.109
SRR1783602	moderate drought stress	2.335
SRR1811619	moderate drought stress	2.253

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.440
DRR006520	Root Summer glycyrrhizin high producing strain	2.740
DRR006521	Root Winter glycyrrhizin high producing strain	2.182
DRR006522	Root Winter glycyrrhizin high producing strain	2.075
DRR006523	Root Summer glycyrrhizin low producing strain	1.645
DRR006524	Root Summer glycyrrhizin low producing strain	1.648
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.544
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.911

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.995
SRR2868004	Drought Stress (root)	6.311
SRR2967015	Control (root)	4.904

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.232
SRR9715740	Leaf	54.357
SRR9715741	Leaf	33.459
SRR9715739	Root	0.631
SRR9715742	Root	1.919
SRR9715743	Root	2.007

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.488
SRR8749028	MeJA induced 9h	3.944
SRR8749029	MeJA induced 9h	1.552
SRR8749030	Uninduced	1.103
SRR8749031	Uninduced	0.403
SRR8749032	Uninduced	0.321

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.071
SRR8400027	Control - Root	6.794