Gene detail information of Glyur001806s00029959 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45660.1 | 9.00E-29 | AGAMOUS-like 20 |
| NR | XP_007134936.1 | 3.21E-35 | hypothetical protein PHAVU_010G088100g [Phaseolus vulgaris] |
| Swissprot | tr|O64645|SOC1_ARATH | 1.00E-35 | MADS-box protein SOC1 |
| trEMBL | tr|V7ARU4|V7ARU4_PHAVU | 1.00E-35 | Uncharacterized protein {ECO:0000313|EMBL:ESW06931.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01806 | 53267 | 53446 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | M-type |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001806s00029959.1 | PF00319.13 | SRF-TF | 9 | 59 | 1.80E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.477 |
| SRR1783600 | control | 4.753 |
| SRR1783602 | moderate drought stress | 10.542 |
| SRR1811619 | moderate drought stress | 8.991 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.344 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.841 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.838 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 34.161 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.927 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.987 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 155.872 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 175.638 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.024 |
| SRR2868004 | Drought Stress (root) | 10.736 |
| SRR2967015 | Control (root) | 10.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.541 |
| SRR9715740 | Leaf | 42.583 |
| SRR9715741 | Leaf | 49.113 |
| SRR9715739 | Root | 0.054 |
| SRR9715742 | Root | 2.140 |
| SRR9715743 | Root | 1.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.127 |
| SRR8749028 | MeJA induced 9h | 2.380 |
| SRR8749029 | MeJA induced 9h | 2.139 |
| SRR8749030 | Uninduced | 5.607 |
| SRR8749031 | Uninduced | 0.977 |
| SRR8749032 | Uninduced | 1.964 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.175 |
| SRR8400027 | Control - Root | 0.594 |