Gene detail

Gene detail information of Glyur001806s00029957.3

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45670.1	0	calcineurin B subunit-related
NR	XP_004510893.1	0	PREDICTED: 1-acylglycerophosphocholine O-acyltransferase 1-like [Cicer arietinum]
COG	YP_008146522.1	3.00E-11	hypothetical protein SCE1572_00225 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q8S8S2\|LPCT2_ARATH	0	Lysophospholipid acyltransferase LPEAT2
trEMBL	tr\|A0A072TP83\|A0A072TP83_MEDTR	0	1-acylglycerophosphocholine O-acyltransferase-like protein {ECO:0000313\|EMBL:KEH19006.1}

Sequence

Transcript Sequence

>Glyur001806s00029957.3
AAAGACTGAAAGGACAGAGGTTGTTCACCCTGGCCTAGAGTAGACAAACCTCTCCCCTCCCCTCCCCTCCCAGTTTCTATTCTACTCAAGCAAAAACCAACAATCATGAACCAAAAGCTCTCCACCGATGAAGGCAAGCCAACGGCCTCAGCAAAAAAAGAAAAGACCCAAAACAGAACCTTCTTGAGAGCAAAAAACCGAGATATATTGTGTGACTAATAAATAACCACAGATGTCCCCCTCGCTCTCTGCAAGCATCCCTATCCAGCACTTGTTTGAGTAGCAGAGGCGGTAAGGAACACCAGGACACATTCAGCAGCACTCCCCTCACTGCCAGATGAGCTACCAACTGCGAAAGGTCACTTTCCCATTTCCCACTATAAAAAATTGAAACACCATAAGCAAAGCAAAACAATGAGAGAAACAGAATCCACCACACACCACACTCCAACAAGCACATAAAAACCACTCAACACTGCTCTTTCTGTTCCCTTTTCCCTTTCGCTTCGTCCTTATTCACTCGTATTACTCTACAGTATTCATACCGTATACTTCCCTCCTCCGTGAATGGCGGACCACGACGCCACCTCCCCGCTACTCTCCTCCGATCACCTCATCGTCACCGTCGATCCCCCCTCCGCCGCCGGTTACTCCATCGGCGGTGGTGCGTGTCCGAACCCCTTCCGAGCGGTGGGGTGCGAGGAGTTGACCGTGCCGGCGGCGATCACGGTGGACCCGTTCCGCAACGACGCGGCGAAGATAATAGGGGTGTACGAGTGGGCGAAGACGGTGGTGTGCCTGCCACTGGCGGTGGTGCGGTTGGTGCTGTTCGGGCTGTGCCTGGCGATAGGGTACGTGGCGACCAAGTTGGCGCTACAAGGGTGGAAGGACAAGGAGAACCCTATGCCTAGGTGGAGGTGCAACATTATGTGGGTCACTCGAATCTGCGCCAGATGCATTCTCTTCTCTTTTGGACGGAAGGGAAGACCTGCCCCAAGGGAAGTTGCTCCAATAATCGTATCTAATCATGTATCCTATATTGAGCCTATCTTCTATTTCTATGAATTATTTGCCACCATTGTGGCATCTGAGTCTCATGACTCCATACCTTTTGTCGGCACCATTATTAGAGCAATGCAGGTCATATACGTTAACAGGTTCTCACCATCATCAAGGAAGCAGGCTGTCAGAGAAATAAAGAGAAGGGCTTCTTGCGATAGATTTCCTCGAGTACTATTATTTCCTGAGGGAACCACGACTAACGGCAGGAACCTTATCTCCTTCCAACTTGGTGCATTTATCCCTGGGTACCCAATCCAGCCTGTAATTGTACGCTATCCTCATGTGCACTTTGATCAATCTTGGGGTAATGTTTCTTTGGGAAAGCTTATGTTCAGGATGTTCACTCAATTCCACAACTTCTTCGTGGTAGAATATCTTCCTGTCATTTCACCCCTGGATGATAAGGAAACTGCTGTTCATTTTCGTGAGAGGGTGAGTCTTCTAATTTTGTTTTGTAGCTTTCATATACTGTAAGAGGACTTTTATATTTATCCTCCTTGCATATTTGAAGCTTTTGACTTTGGATTGCATAATTTCATGATTTGCTAAATGTAGAAAACAATTGTCAATATTTTGATCCTTGAAGCCTCTTTATGTATATATGTTTTAACTGAAATAAATTGAAGAAGATTCCTCTCTGGGCATCTGAGAATCTTCTTTTAGTCTTTTACCTCTAACGTAGTGGTTGGTTAGGGGGATATGGAGGGAAGGTAAGGTCTCGATTTCCATGTGTGGATAGTCAGTAACTATTTAACAATTAATATATGGATAAATGCAGGTTAGCCATGCTATTGCAACCGCAATGAATGTTGTCCAAACTGGACATTCTTATGGAGACATAATGCTTCATATGAAAGCACAAGAAGCAAAACAGGTGTGCACTTTTTATTATTGGTTACGATTATCTATTCATCCTAGTAACTTAATTGCTTTTTGCATTTTGAAAATTTAATTTGCTTTTCATCATATACAATGGTCAAATTCGAACTTGGGAAACAAGTATCAGGTTGGTTAGCATTTAAATATTATTTTCACTCAGAAGAATCCAGATTTGTTGTCACTGACATTTTAACTTGTTAACTTTTGCAGGAGAACCCCTCAAGATATTTGGTTGAAATGGCCAAGGTGGAATCATTATTTCATATCAGCAGCTTGGAAGCTGTGGATTTTCTGGATAAATTCTTGGCTATGAATCCTGATCCCAGGTATTATTGTCACATTCCTGTAAGTTGTAACTAACTAGGAAAACGTTTCTTGCTCAGTTACAGGGGGAAACAAATTATAATTGATATTTATATTTAGTGGTAAGCAATTGATTGTTAAATTATTACTAAAACGTTTTTTAGAATAAGAATGAAACGCAAAATATGATGACAAGCCAATGTTGACATTTTACTTCATTTGACTGAGTTAGTTATAATGGAATTAGCTTGTTTGTTGAAAATGTTTGTTGAAACTTGAAATACCTATGGTTGCTTACTTTCCATAATTCCATGCAAAACCTCTCTTAGTAAGTAGTAATTTTTCACAGGAAGTGAAGGGTTGAATTTTACAGCTCACCTAGTTCCTATATTTATTTTTTTTCTATAGAAGATAATTTCTAGTCTCTCTTGGACAAGGACAACTTGAACGAAGATATCATCTTTAAAATTTGAAACTACTATGTATCTTCACTTAAATTGGAGGCCTGAACAAGAGGTCTATGTTTGGTACATGGGTATGATATTACCACATGCATCTCAAATTCCCTTTTACCTCAGATGCCTTACTTGTAAGGGTGTGATTCTCTGTCAGACATATGGGAATCTTGGATGTTTGTGCATGTAATTTCCTGACAGCTAGATGTTTGAGATTCCCAATTGCAATCAAACAAGGGCATCAGATGTGCATAGGAATGTAAGGTGATTAACAATTGTGTACTAACTGGGGGAATCCTACATAGCCATAATCTAAGATACACATCCACCAAATATCTCCTCATAATGTTCTATGAAGAGCCTATTTGGAGCTAATTAACCGTTAATTAGCTCCAAATTATTAACCCCTCGCCCCTCCCTTCTGTCCATGGGGCGTTGCTGGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01806	28151	44066	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13510	LPCAT1_2	EC:2.3.1.23 2.3.1.67	Glycerophospholipid metabolism	map00564
			Glycerophospholipid metabolism	map00564
			Glycerophospholipid metabolism	map00564
			Ether lipid metabolism	map00565
			Ether lipid metabolism	map00565
			Ether lipid metabolism	map00565

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016746 transferase activity, transferring acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001806s00029957.3	PF01553.16	Acyltransferase	149	253	1.40E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.122
SRR1783600	control	10.171
SRR1783602	moderate drought stress	12.060
SRR1811619	moderate drought stress	11.993

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.727
DRR006520	Root Summer glycyrrhizin high producing strain	8.725
DRR006521	Root Winter glycyrrhizin high producing strain	7.699
DRR006522	Root Winter glycyrrhizin high producing strain	7.418
DRR006523	Root Summer glycyrrhizin low producing strain	7.956
DRR006524	Root Summer glycyrrhizin low producing strain	7.921
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.829
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.692

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.409
SRR2868004	Drought Stress (root)	15.610
SRR2967015	Control (root)	16.483

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.434
SRR9715740	Leaf	10.608
SRR9715741	Leaf	11.881
SRR9715739	Root	9.370
SRR9715742	Root	12.495
SRR9715743	Root	10.495

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.889
SRR8749028	MeJA induced 9h	7.500
SRR8749029	MeJA induced 9h	5.677
SRR8749030	Uninduced	3.205
SRR8749031	Uninduced	1.010
SRR8749032	Uninduced	2.706

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.533
SRR8400027	Control - Root	16.464