Gene detail

Gene detail information of Glyur001806s00029956

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G00230.1	0	xylem serine peptidase 1
NR	XP_004510915.1	0	PREDICTED: xylem serine proteinase 1-like [Cicer arietinum]
COG	YP_004097803.1	2.00E-83	peptidase S8 and S53 subtilisin kexin sedolisin [Intrasporangium calvum DSM 43043]
Swissprot	tr\|Q9LLL8\|XSP1_ARATH	0	Xylem serine proteinase 1 (Precursor)
trEMBL	tr\|A0A072TZN1\|A0A072TZN1_MEDTR	0	Subtilisin-like serine protease {ECO:0000313\|EMBL:KEH19005.1}

Sequence

Transcript Sequence

>Glyur001806s00029956.1
ATGTATGTGCTTATAAGACAACATTCAGGATTTAAATGGCTTACAGTTGGTAGCTCATCTGGCAGTGAGGGGAGTGCTGCTGAATGTGTCCTGGCCGTTGGCTTGCCTTCATCGGTGGAGAGCTTTTGGTTCATGATTGTTGGTTTTTGCTTGAGTAGAATAGAAACTGGGAGGGGAGGGGAGGGGAGAGTATCTCTTGCTATTGCTTATCTGAAACTTACATACTCCTTATTTTCTCTTCTTTGGCTTACATTACTGCTTATCCTACTGAGCATGACTGTTTCAGTTAACGGTGCTGAACAAAAGAACTTTTACATTGTTTTCTTGGGAGCTCATCCTGTGACTAGAGACATAGCAGTAGACACCCATTTGAATATTCTCTCAGCTGTTAAACAAAGCCACCTTGAAGCCAAAGAATCCATGGTATACAGCTACACAAAGAGCTTTAATGCATTTGCTGCTAAACTGTCTGAGGATGAAGCCAAGAAGTTATCTGGCATATCATGGGACTTTATTGGATTACCTTTGACTGCTAAAAGAAAACTGAAATCAGAGAATGACACAATTGTGGCTCTTTTGGATACAGGGATCACTCCTGAGTTTCAAAGCTTCAAGGACAAAGGATTCGGTCCTCCACCAGCTAAATGGAGAGGAAATTGTGACCAATATACTAATTTCTCAGGCTGCAATAACAAGATCATAGGAGCCAAACACTTCAAGCTTGATGGGAAGACTGATCCCTCTGACATACTATCTCCCATAGATGTGGANGGCCATGGCACTCATACTGCATCAACAGCAGCAGGCANTCTTGTCCCGAATGCAAGTCTCTTCGGGTTAGCCAAAGGGACCGCTCGCGGGGCGGTGCCTTCGGCCAGGTTGGCAGTTTACAAAGTGTGCTGGACAAAGGATGGATGTGCAGACATGGACATACTTGCTGCATTTGAGGCTGCTATACATGATGGTGTGGATGTCATATCCATTTCCATAGGTGGAGGGAATGCAAATTATGTGCAGGACTCTATAGCAATTGGTGCATTTCATGCCATGAGGAAAGGCATAATCACTGTGGCCTCAGCTGGAAATGATGGTCCAACTATGGCAACTGTCACAAACAATGCGCCATGGATTGTAACCGTAGCTGCTAGTGGCATTGATAGGGATTTCCGGAGCACTATACAGTTGGGGAGTGGAAAAAATGTTTCTGGGGTGGGAATAAGCANCTTCAATCCAAAACAAAAACAGTACCCCCTTGTTAATGGGATGGATGCAGCTCGAAACTCTGCAAGCAAGGAAAATGCTAGGTTCTGCTTTAAAGACTCCCTAGAGCCAAATAAGGTGAAACGAAAGCTTGTTTACTGTAGATTAGGAACATGGGGAACTGAAGCTGTTGTGAAAGCAATTGGTGGCATTGGTACTGTAGTTGAAAGTGAGCAATTTCCTGATGTTGCCCAAATTTTCATGGCTCCTGCTACAATGGTGAATAGCAGCCTAGGTCAAATTATTACCAATTATATACAATCCACAAGATCACCATCAGCAGTGATACATAAGAGCCATGAAGTAAAAAGACCAGCTCCATTTGTTGCTTCATTTTCATCTAGNGGTCCAAATCCAGGATCTCAGCATGTTCTCAAGCCTGATGTAACAGCTCCTGGCATTAACATCTTGGCATCTTATACACTTAGGAAGTCAGTTACTGGCTTGAAAGGGGACACCCAATTTTCAGAATTTACACTAATGTCTGGGACTTCTATGTCATGCCCTCATGTTTCTGGAGTAGCAGCATATGTGAANTCATTTCACCCAGATTGGACTCCTGCTGCAATCAGATCAGCCATAATTACCACAGCTAAACCTATGAGCCTTAGAGTTAACAAGGAGGCAGAATTTGCCTTTGGTGCTGGTCAAGTCAACCCAACAAGAGCTGTGAACCCTGGATTAGTCTATGACATGGATGACTTTTCTTATATCCAGTTCCTATGCCATGAGGGCTATAATGGTTCCACATTATCAGTATTAGTTGGTTCTCCTGTGAATTGCACCTCTTTGCTTCCTGGGCTTGGCCATGATGCTATTAACTATCCCAGCATGCAACTAAGTGTGAAAAGCAACAGAGAAACTACAGTGGGAGTTTTCAGGAGAAGAGTGACAAATGTAGGTCCTGGACCAACCATCTACAATGCCACCATAAGATCTCCCAAAGGAGTGGAAATCACAGTGAAGCCTACTAGCCTCATTTTCTCTCACACCTTTCAGAAGAGGAGCTTCAAGGTAGTGGTGAAAGCAAAATCTATGGCAAGCATGCAAATTGTATCAGGTTCACTTATTTGGAGAAGCCCCCGTTACATTGTTAGGAGCCCTATTGTTATCTACAGTCCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01806	22487	28545	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004252 serine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001806s00029956.1	PF05922.11	Inhibitor_I9	105	165	3.70E-07
Glyur001806s00029956.1	PF00082.17	Peptidase_S8	189	645	7.10E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.370
SRR1783600	control	0.367
SRR1783602	moderate drought stress	0.498
SRR1811619	moderate drought stress	0.527

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.127
DRR006520	Root Summer glycyrrhizin high producing strain	1.010
DRR006521	Root Winter glycyrrhizin high producing strain	1.701
DRR006522	Root Winter glycyrrhizin high producing strain	1.435
DRR006523	Root Summer glycyrrhizin low producing strain	2.681
DRR006524	Root Summer glycyrrhizin low producing strain	2.770
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.178
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.222

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.260
SRR2868004	Drought Stress (root)	4.695
SRR2967015	Control (root)	5.882

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.753
SRR9715740	Leaf	0.470
SRR9715741	Leaf	1.148
SRR9715739	Root	0.034
SRR9715742	Root	0.684
SRR9715743	Root	0.533

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.710
SRR8749028	MeJA induced 9h	1.025
SRR8749029	MeJA induced 9h	0.749
SRR8749030	Uninduced	1.799
SRR8749031	Uninduced	2.089
SRR8749032	Uninduced	3.142

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.072
SRR8400027	Control - Root	1.011