Gene detail information of Glyur001806s00029953 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G15420.1 | 8.00E-23 | |
| NR | XP_004506896.1 | 5.42E-108 | PREDICTED: WD repeat-containing protein 43-like isoform X4 [Cicer arietinum] |
| trEMBL | tr|A0A072UH09|A0A072UH09_MEDTR | 1.00E-107 | Transducin family protein/WD-40 repeat protein, putative {ECO:0000313|EMBL:KEH28716.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01806 | 11944 | 16625 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001806s00029953.1 | PF04003.7 | Utp12 | 126 | 215 | 7.10E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.506 |
| SRR1783600 | control | 17.977 |
| SRR1783602 | moderate drought stress | 19.074 |
| SRR1811619 | moderate drought stress | 19.209 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.206 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.022 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.174 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.293 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.217 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 32.954 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.761 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.899 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 32.015 |
| SRR2868004 | Drought Stress (root) | 29.320 |
| SRR2967015 | Control (root) | 30.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 34.960 |
| SRR9715740 | Leaf | 43.300 |
| SRR9715741 | Leaf | 39.994 |
| SRR9715739 | Root | 4.392 |
| SRR9715742 | Root | 15.186 |
| SRR9715743 | Root | 13.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 71.947 |
| SRR8749028 | MeJA induced 9h | 77.481 |
| SRR8749029 | MeJA induced 9h | 87.824 |
| SRR8749030 | Uninduced | 58.530 |
| SRR8749031 | Uninduced | 45.324 |
| SRR8749032 | Uninduced | 49.774 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 31.430 |
| SRR8400027 | Control - Root | 30.730 |