Gene detail

Gene detail information of Glyur001804s00033609

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58300.2	2.00E-168	Leucine-rich repeat protein kinase family protein
NR	XP_004502808.1	0	PREDICTED: probable inactive receptor kinase At5g58300-like isoform X1 [Cicer arietinum]
COG	YP_004775215.1	1.00E-18	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LVM0\|Y5830_ARATH	0	Probable inactive receptor kinase At5g58300 (Precursor)
trEMBL	tr\|A0A072V109\|A0A072V109_MEDTR	0	Receptor-like kinase {ECO:0000313\|EMBL:KEH35517.1}

Sequence

Transcript Sequence

>Glyur001804s00033609.1
ATGAAGTTACAGTTCTCTATTGTTGCTCTTGTTCTATTAAGCTCCTCCACACTGTCTTCTCTCTTTGGCTTGGTTGTTGTATCTGCTGACTTGAACTCTGACAAACAAGCTCTTTTGGAGTTTGCTTCTACTGTCCCACATGCCCCAAGGCTCAATTGGAGTAACTCTTCTTCAATTTGCACCTCATGGATTGGAGTGACTTGCAACGCGAATCAAACTCGTGTCATAGGCATCCATCTCCCAGGAATTGGACTAACAGGTTCCATTCCTGAGAACACCATAGGTAAACTAGATGCTCTAAGGGTCCTAAGCCTTCATTCCAATGGCCTTGTAGGAACTATTCCTTCTAACATCCTCTCCATTCCTTCACTCCAATTTGCACACCTTCAGCACAACAACTTCTCAGGTCTAATTCCTTCTTCTGTCTCCCCAAAACTCATTGCANTGGATGTTTCCTTTAACTCCTTCTCTGGCAGTATCCCACCTGCATTTCAGAACCTGAGAAGACTCACTTGGTTGTATCTCCAAAACAATTCAATATCAGGAGCTATCCCTGACTTTAACCTCCCAAGTCTCAAACATTTGAATTTGAGCTATAACAACTTAAATGGCTCTATTCCAAGTTCCATCAAAACATTCCCTTCTACTTCTTTTGTTGGTAACTCTCTCTTATGTGGGCCACCTCTCAATAATCATTGCTCTACAATAATCTCCCCTTCTCCTTCCCCAGTTTCCCAGCCACTCTCTCCACCAACCACCATCCAAAACCAAAAGGCTACCACTCATAAGAAAAGCTTTGGCATAGCTACTATACTTGCTCTAGCCATTGGGGGCATTGCTTTCCTCTCTCTACTATTCTTGGTGATCTTTGTATGCTTCTTGAAGAGGAAGAAAAACAGTAAAAGCAGTGGCATACTGAAAGGGAAGGCTTCTTGTGCTGGAAAGACTGAGGTTTCAAAGAGTTTTGGGAGTGGGGTGCAAGCAGCTGAAAAGAACAAGTTGTTTTTCTTTGAAGGTTCCTCTTTTAGCTTTGACCTTGAGGATTTGCTAAAGGCTTCAGCTGAAGTTCTTGGGAAAGGGAGCTATGGGACAGCATACAAGGCTGTTTTGGAGGAGGGAACAACAGTGGTGGTTAAAAGGTTGAAGGAAGTTGTGGTTGGAAAGAAGGAGTTTGAGCAGCAGTTGGAGATTGTNGGTAGAATTGGGCGCCACCCCAATGTCATGCCCCTTCGAGCTTATTACTATTCCAAAGATGAGAAACTTTTAATTGCACTTGGGGCAGCCAAGGGAATTGCCTTCATCCACTCAGAAGGGGGTCCAAAGTTTGCACATGGAAACATCAAGTCAACCAATGTGCTCATAACCCAAGAACTTGATAGCTGCATCACTGATGTTGGATTGACCCCTCTGATGAATGCCCCAGCAACCATGTCAAGAGCCAATGGCTATAGAGCTCCAGAAGTCACTGATTCAAGGAAGATCACACAGAAGTCTGATGTATACAGCTTTGGTGTGCTGCTTCTTGAAATGCTGACAGGAAAAACCCCATTGAGGTATCCTGGGTATGAGGATGNGGTTGATCTTCCAAGGTGGGTGAGGTCTGTTGTGAGGGAGGAATGGACAGCTGAAGTCTTTGATGAGGAGCTTCTGAGAGGCCAATATGTTGAAGAGGAAATGGTTCAGATGCTTCAGATTGCACTGGCATGTGTGGCTAAGGGGCCAGATATGAGGCCTAGAATGGATGAAGCTGTTAGAATGATAGAGGAAATTAAGCAACCTGAGTTGAAGAACCGGATATCCTCTGAGTCTGACTCTAATGTGCAGACACCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01804	36772	39028	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.13.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001804s00033609.1	PF08263.7	LRRNT_2	31	69	7.10E-09
Glyur001804s00033609.1	PF13855.1	LRR_8	150	202	3.00E-08
Glyur001804s00033609.1	PF00069.20	Pkinase	422	584	1.30E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.697
SRR1783600	control	21.699
SRR1783602	moderate drought stress	18.397
SRR1811619	moderate drought stress	18.391

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.857
DRR006520	Root Summer glycyrrhizin high producing strain	34.322
DRR006521	Root Winter glycyrrhizin high producing strain	0.783
DRR006522	Root Winter glycyrrhizin high producing strain	0.702
DRR006523	Root Summer glycyrrhizin low producing strain	26.124
DRR006524	Root Summer glycyrrhizin low producing strain	26.496
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.407
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.235

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	83.099
SRR2868004	Drought Stress (root)	59.028
SRR2967015	Control (root)	67.548

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.228
SRR9715740	Leaf	4.721
SRR9715741	Leaf	6.550
SRR9715739	Root	13.103
SRR9715742	Root	36.271
SRR9715743	Root	29.018

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.116
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.062

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.502
SRR8400027	Control - Root	47.379