Gene detail

Gene detail information of Glyur001804s00033608

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10870.1	1.00E-87	methyl esterase 17
NR	XP_004502811.1	7.83E-168	PREDICTED: methylesterase 17-like [Cicer arietinum]
COG	YP_001531045.1	9.00E-23	alpha/beta hydrolase fold protein [Desulfococcus oleovorans Hxd3]
Swissprot	tr\|Q9SG92\|MES17_ARATH	4.00E-117	Methylesterase 17
trEMBL	tr\|A0A072V0H6\|A0A072V0H6_MEDTR	1.00E-164	Methylesterase {ECO:0000313\|EMBL:KEH35519.1}

Sequence

Transcript Sequence

>Glyur001804s00033608.1
GTTCGTGTTGACATTTTCAAAGTTCTGATGATGGATTGAAATGACCCCTATATCTATGAACCCCTGAATAATAATAATATTCCTATAATATGAAACAAGGAAAATATAAAAAGGGAAACGTCATGACTCATGAATCATGACCCCCTCAACTATTCTTATCTTATATATATATATATATATATATGCTCACAATAACATTGAAAGCAAAAGAAGCTGAGCAATAATAAGCATAATGATAGTGAAGGCAGAGGAAGCCATGGCAGTGAGAGGAGAGGAAGAAGGAGTAGTTGATTCAAGAGAAGAAGAAGAAGAAGGTATTAATATTAGTATTCCCTTGAAACAACACTTTGTGCTGGTACATGGCATAAGTGGAGGAAGTTGGTGCTGGTACAAAATCCGGTGCCTCATGGAGAATTCCGGCTACAAGGTCTCATGCATAGACCTCAAAAGTGGTGGAATTGATCAATCTGATGCTGATTCTATTCTATCCTTCGATGATTATAATAAACCTCTCATTGATTTCATGTCTGCTTTGCCTGAGAATGAACAGGTTATATTGGTGGGGCACAGTGCTGGAGGGTTGAGTATTACTCAGGCCTGTTACAAGTTTGCAAATAAGATCCGGTTAGCAGTGTATGTGGCAGCAACTATGCTTAAGTTTGGATACTNCACCGATGAAGATCTTAAAGATGGAGTACCTGACTTATCAGAGTTCGGGGATGTGTACGAGCTAGGGTTTGGATTGGGACAGGATAAGCCTCCAACCAGTGCTTTGATAAAGAAAGAGTTTCAACGCAAAATCATCTATCCTTTGAGCCCTCACGAGGTAGCAATGCTGTTGAGGCCAGGGCCATTGCTAGCATTGACGGGTGCGCGATTCAGCGAGGAAGANGGTGAAGAAGTGGAGAAGGTGCGACGCGTGTACATAAGGACAAGGCATGACAACGTGGTGAAGACAGAGCAACAGGAAGCCATGATAAATAGGTGGCCACCAGCTACAGTGTATGAACTTGACAGTGACCATAGNCCCTTCTTCTCCACCCCTTTCCTCCTCTTTGGCCTCCTTCTCAAAGCTGCTGCTTCCTTTGCTTTTGAGTCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01804	28343	32461	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001804s00033608.1	PF12697.2	Abhydrolase_6	39	271	1.80E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.139
SRR1783600	control	6.352
SRR1783602	moderate drought stress	5.727
SRR1811619	moderate drought stress	6.071

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.383
DRR006520	Root Summer glycyrrhizin high producing strain	18.734
DRR006521	Root Winter glycyrrhizin high producing strain	0.201
DRR006522	Root Winter glycyrrhizin high producing strain	0.193
DRR006523	Root Summer glycyrrhizin low producing strain	31.436
DRR006524	Root Summer glycyrrhizin low producing strain	31.234
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.255
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.566

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	115.773
SRR2868004	Drought Stress (root)	160.489
SRR2967015	Control (root)	95.599

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.170
SRR9715740	Leaf	4.923
SRR9715741	Leaf	8.819
SRR9715739	Root	20.277
SRR9715742	Root	45.241
SRR9715743	Root	45.112

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	52.600
SRR8749028	MeJA induced 9h	99.930
SRR8749029	MeJA induced 9h	61.414
SRR8749030	Uninduced	188.858
SRR8749031	Uninduced	48.464
SRR8749032	Uninduced	16.488

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.082
SRR8400027	Control - Root	36.244