Gene detail

Gene detail information of Glyur001804s00033605

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40780.1	2.00E-53	Nucleic acid-binding, OB-fold-like protein
NR	XP_004502815.1	1.27E-93	PREDICTED: probable RNA-binding protein EIF1AD-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q3EBI7\|FB130_ARATH	1.00E-05	F-box protein At2g40910
trEMBL	tr\|V7AS60\|V7AS60_PHAVU	1.00E-93	Uncharacterized protein {ECO:0000313\|EMBL:ESW08404.1}

Sequence

Transcript Sequence

>Glyur001804s00033605.1
ATGTCTAAAAAAACAAAAAAGGGAAATAGAAATGTCTATGATGAGGATGAGGATGAGGATGAGGATGAAGAAACTAAGAAAAATGTAGCGATCGCAGCTGCCCTACTAACCACAGAAAGTGACGCCGCGACAGAAAGCCAAGGAAGCTGCGCGCAATCGCCCTCGGCCACGCCACGTCGCTGCGCCGTCTCCCTCCACCGTCGCCGTCACACGGAAGTCTCAACTAAGCACAAGGAAGCTGCTCGCAAATCGCAACACTGCATCCACTCTGCAACTCAAGAGGTGGCCATGAGAGGAGGAAGGAAGAATTTGAAGAGGGCAACGGAGGAAAAGCATGTAACTCTTCAAGATGGGCAAAACATCGTGCAGGTGGTGTCTCTTCGAGGCTCCAATCTCATCGAGGTCATGGATGCACATGGCGAGAAATCACTAGCCCTATTTCCTGCGAAATTTCAGAAAAGCATGTGGATAAAACGAGGAAGTTTCGTGGTGGCTGATGAAAGTGGAAAGGAAAAGGCTCTTGAATCAGGTAGCAAGGTTGCATGTCTTGTTTCTCAAGTTCTTTACTATGAACAAGTTCGAGCACTGCAGAAATCTCCAGAATGGCCTGAAATTTTTAAATCTGGGATGGTAGATGATTCAATTGAAAAAATCACTTCCCAACAAGAGAATGAGATGGACGCAAGTGATGATGATGGACTGCCTCCATTGGAAGCCAATACAAACAGGATGAGACCTTTTGGGTCGCAAGCTGATGAAGATTTAGAATCTAATTCAGATACAGATGATTGAATCATATAGTTGGGCTCCCACACTTGCATATGGATGATTGCATTCAAGTTCAACCAACACTGTATGTGAAAGAATGTTCTTGTCCTATCTTCGCGTGCTTACTTTGCTGAGTATATACATGTTCGGACTCAACTGAAAACAAAGCAATTGAGTTTGCATTTACATGTATGACTATAATACACAAACAGACCTGAGATAATTTATTTGATTAACTGCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01804	9655	12968	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006413 translational initiation

molecular_function

GO:0003723 RNA binding

GO:0003743 translation initiation factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001804s00033605.1	PF01176.14	eIF-1a	117	169	5.30E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.191
SRR1783600	control	8.896
SRR1783602	moderate drought stress	13.209
SRR1811619	moderate drought stress	12.969

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.942
DRR006520	Root Summer glycyrrhizin high producing strain	22.907
DRR006521	Root Winter glycyrrhizin high producing strain	34.946
DRR006522	Root Winter glycyrrhizin high producing strain	33.706
DRR006523	Root Summer glycyrrhizin low producing strain	20.553
DRR006524	Root Summer glycyrrhizin low producing strain	20.154
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.655
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.895

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.678
SRR2868004	Drought Stress (root)	26.014
SRR2967015	Control (root)	22.938

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.095
SRR9715740	Leaf	5.434
SRR9715741	Leaf	8.355
SRR9715739	Root	2.989
SRR9715742	Root	9.285
SRR9715743	Root	9.044

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	36.561
SRR8749028	MeJA induced 9h	29.147
SRR8749029	MeJA induced 9h	36.925
SRR8749030	Uninduced	12.864
SRR8749031	Uninduced	11.837
SRR8749032	Uninduced	12.947

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.318
SRR8400027	Control - Root	31.382