Gene detail information of Glyur001800s00041034 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G03810.4 | 7.00E-11 | 18S pre-ribosomal assembly protein gar2-related |
| NR | AES97262.2 | 2.87E-167 | hypothetical protein MTR_5g047930 [Medicago truncatula] |
| trEMBL | tr|G7JZ77|G7JZ77_MEDTR | 1.00E-167 | Uncharacterized protein {ECO:0000313|EMBL:AES97262.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01800 | 11772 | 15701 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.116 |
| SRR1783600 | control | 6.143 |
| SRR1783602 | moderate drought stress | 5.241 |
| SRR1811619 | moderate drought stress | 5.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.148 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.163 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.920 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.743 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.263 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.353 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.811 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.429 |
| SRR2868004 | Drought Stress (root) | 27.396 |
| SRR2967015 | Control (root) | 27.637 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.900 |
| SRR9715740 | Leaf | 11.462 |
| SRR9715741 | Leaf | 14.373 |
| SRR9715739 | Root | 2.391 |
| SRR9715742 | Root | 12.353 |
| SRR9715743 | Root | 11.128 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 34.331 |
| SRR8749028 | MeJA induced 9h | 40.705 |
| SRR8749029 | MeJA induced 9h | 35.722 |
| SRR8749030 | Uninduced | 37.528 |
| SRR8749031 | Uninduced | 24.630 |
| SRR8749032 | Uninduced | 22.578 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.231 |
| SRR8400027 | Control - Root | 19.450 |