Gene detail information of Glyur001797s00037721 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03900.2 | 3.00E-132 | Iron-sulphur cluster biosynthesis family protein |
| NR | XP_004513508.1 | 0 | PREDICTED: uncharacterized protein At5g03900, chloroplastic-like isoform X1 [Cicer arietinum] |
| COG | NP_925735.1 | 7.00E-54 | hypothetical protein glr2789 [Gloeobacter violaceus PCC 7421] |
| Swissprot | tr|Q8GW20|Y5390_ARATH | 2.00E-175 | Uncharacterized protein At5g03900, chloroplastic (Precursor) |
| trEMBL | tr|G7L3A6|G7L3A6_MEDTR | 0 | Iron-sulfur cluster biosynthesis family protein {ECO:0000313|EMBL:AES78406.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01797 | 30040 | 42608 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.620 |
| SRR1783600 | control | 4.346 |
| SRR1783602 | moderate drought stress | 8.157 |
| SRR1811619 | moderate drought stress | 8.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.337 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.005 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.831 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.535 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.709 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.404 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 43.764 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 43.839 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.506 |
| SRR2868004 | Drought Stress (root) | 17.886 |
| SRR2967015 | Control (root) | 17.798 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.643 |
| SRR9715740 | Leaf | 57.156 |
| SRR9715741 | Leaf | 33.316 |
| SRR9715739 | Root | 3.850 |
| SRR9715742 | Root | 8.585 |
| SRR9715743 | Root | 6.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.790 |
| SRR8749028 | MeJA induced 9h | 8.215 |
| SRR8749029 | MeJA induced 9h | 4.282 |
| SRR8749030 | Uninduced | 3.643 |
| SRR8749031 | Uninduced | 2.614 |
| SRR8749032 | Uninduced | 3.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.587 |
| SRR8400027 | Control - Root | 19.645 |