Gene detail information of Glyur001793s00029324.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29380.1 | 3.00E-54 | protein kinase family protein / WD-40 repeat family protein |
| NR | KEH27226.1 | 6.74E-78 | phosphoinositide 3-kinase regulatory subunit-like protein [Medicago truncatula] |
| COG | YP_007162834.1 | 6.00E-06 | WD40 repeat-containing protein [Cyanobacterium aponinum PCC 10605] |
| trEMBL | tr|A0A072UCN9|A0A072UCN9_MEDTR | 3.00E-78 | Phosphoinositide 3-kinase regulatory subunit-like protein {ECO:0000313|EMBL:KEH27226.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01793 | 30766 | 31212 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K08333 | PIK3R4, VPS15 | EC:2.7.11.1 | Autophagy - animal | map04140 |
| Autophagy - yeast | map04138 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001793s00029324.1 | PF00400.27 | WD40 | 44 | 81 | 2.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.813 |
| SRR1783600 | control | 6.669 |
| SRR1783602 | moderate drought stress | 2.896 |
| SRR1811619 | moderate drought stress | 2.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.934 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.900 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.244 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.869 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.831 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.864 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.416 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.837 |
| SRR2868004 | Drought Stress (root) | 1.846 |
| SRR2967015 | Control (root) | 5.284 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.217 |
| SRR9715740 | Leaf | 1.791 |
| SRR9715741 | Leaf | 4.536 |
| SRR9715739 | Root | 1.108 |
| SRR9715742 | Root | 3.048 |
| SRR9715743 | Root | 2.621 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.323 |
| SRR8749028 | MeJA induced 9h | 0.045 |
| SRR8749029 | MeJA induced 9h | 0.026 |
| SRR8749030 | Uninduced | 0.207 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.248 |
| SRR8400027 | Control - Root | 27.773 |