Gene detail

Gene detail information of Glyur001789s00033169

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G46410.2	2.00E-65	SCP1-like small phosphatase 4
NR	XP_004499597.1	0	PREDICTED: CTD small phosphatase-like protein 2-like isoform X1 [Cicer arietinum]
COG	YP_761477.1	7.00E-11	phosphoprotein phosphatase [Hyphomonas neptunium ATCC 15444]
Swissprot	tr\|Q5S7T7\|TIM50_PHYIN	2.00E-14	Mitochondrial import inner membrane translocase subunit TIM50 (Precursor)
trEMBL	tr\|A0A072UU09\|A0A072UU09_MEDTR	0	NLI interacting factor-like phosphatase {ECO:0000313\|EMBL:KEH32821.1}

Sequence

Transcript Sequence

>Glyur001789s00033169.1
CACCACATGTCCTTAAACTTAGGGTTCCATAGATTTTGCTTTGTTTGAGAGCTTTTGGAAGTTAGCNAAGTTGTTGGTTTCTTGATTTTAATATACTTACATGTTGATATGAAAACATGAACGTTATGCAGATTAGTATCATTTGTCTGTGATCCTTTTTTGCATTTCCATTTTATGCACAATGTTTTGTATGACCTGTATTTTGTTTTTATTTCTCAAAGGTTAGACGCAAATTACAAACTGTCAATAGATTGCATTGACTATTCACTATAGACTATTCTTCAGAAGCCCAGATTTGATGCCAGCCCTTAAAATGAAGTCTATATCTACTACAACTTGCAAGAGAGATGGGAGGTTTTGGCATAATTAAAGAAACACCCAAGGAGCATGACAGTGAAAAAGACCAAATGTCATCTATTATGGATGTAATTATGGGGCAGAACTGTCTTTCATCTAATGGCTGTTCAGGTTCAATAGTGGAAAGGGATTCTTTGCCGTTTTCTCTTCCCTCAAGTTCAGATACAATGTTGTCATATTTTGATAGGCCTATTGATGTCCATTGTAACCAATTTGAAGAAGTTAATAAGGAGCAAATCAATAAGGCACCTCAAGTGGATGACAATAACTTTCCCGACTTCCAAATGCCTGATGTGTTGTTAGACTCCTATTTGGATGGAGCATGTCTCAATGGGTTTTCCAGTGACGGGATCACTGTATTTGATGACAGCTGCAACTATAATACCCTTTCTGATCTTGAATTTGTTGGGACAAATTCAATACACGATCTTCCGACCCTTGATGACACAATAGCAGCAGAAGAGTACCATTATGAAGGATCATGTGAAGAGTTTCTGCAGATGCCTGATCCTTCATGGTTCCATTCCATGTGCCATCAAGCCAAGCCATTTAGTGAAGAACCTGATATCTTTGATTCTGAAAGATCAGATTATTCTGATCCAGAGACATTCATTAAAAACTTTTTAGCGATATCAGATGAATCTAACTCTTTGCCTGCACTAGTAAGCAAGGAAACAAGTAAAAGGAAGCCTATTACCCTTGTTCTTGATTTGGATGAAACGCTGATCCATTCTACAACAGATCAATGTGATAGTGCTGACTTCACAATTCAAATTTTCCTTGACAAGGAGTACACTGTCTATGTACGAAAGAGGCCCTTCCTCAGAGAATTTTTGGCAGTAGTTTCACAGATGTTTGAAATCATCATTTTCACAGCTAGTAAAAGGATATATGCTGAAAAATTGCTGGATGTTCTTGACCCTGATAATAAGCTTTTTTCTCGACGAGTATACCGAGAATCGTGCATCATTCAAGATAACACCTACACCAAAGATTTGACAGTTCTTGGAATTGACCTGGCAAAAGTATTTATAATCGACAACTCTCCTCAGGTGTTCAGGTTGCAAGTTGACAATGGGATTCCTATTGAAAGCTGGTTTGATGATCCTTCTGATTCTGCTCTGATGACTTTACTCCCCTTTCTGGAGAAGCTGGTTGATGTGGATGATGTTCGTCCCATCATTGCAGAGAAATTTAGGCCTAAGAATTGATTTTGCATTCTCAGCACACTGCTGGCATCAAATTCTGGAAACACCCCTTTGCCTTGCCCTTCATATAAGCAGTAGATAATAACTAATCTTAGGAAATTGAGTCCTTCAAAATAACCCTGCCTAGCTAGGTGTTTTTCTTTATACATTTTAGTTGACTCTCTAGTGAGTTTTCNCAAACGGCTACGATTCTGTGATTGCCGGTTGGTATATGTTAAAAAAATTGTATATAAATAGTACAATAATTTGGTTTCAATTTTTGGCTTTTGATTTTCATTGTTGTATACACTTAGAAAGGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01789	50289	54754	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0016791 phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001789s00033169.1	PF03031.13	NIF	236	395	2.10E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.831
SRR1783600	control	14.021
SRR1783602	moderate drought stress	20.879
SRR1811619	moderate drought stress	21.119

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.604
DRR006520	Root Summer glycyrrhizin high producing strain	18.806
DRR006521	Root Winter glycyrrhizin high producing strain	49.933
DRR006522	Root Winter glycyrrhizin high producing strain	48.835
DRR006523	Root Summer glycyrrhizin low producing strain	30.112
DRR006524	Root Summer glycyrrhizin low producing strain	30.309
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.256
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.043

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.770
SRR2868004	Drought Stress (root)	36.852
SRR2967015	Control (root)	46.022

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	35.690
SRR9715740	Leaf	38.998
SRR9715741	Leaf	56.064
SRR9715739	Root	5.860
SRR9715742	Root	16.326
SRR9715743	Root	12.072

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.295
SRR8749028	MeJA induced 9h	65.175
SRR8749029	MeJA induced 9h	45.884
SRR8749030	Uninduced	57.332
SRR8749031	Uninduced	105.049
SRR8749032	Uninduced	78.210

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.289
SRR8400027	Control - Root	18.893