Gene detail

Gene detail information of Glyur001789s00033168

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47690.1	3.00E-133	binding
NR	XP_006584105.1	0	PREDICTED: sister chromatid cohesion protein PDS5 homolog B-B-like isoform X3 [Glycine max]
Swissprot	tr\|Q8L7N0\|TCPZB_ARATH	9.00E-12	T-complex protein 1 subunit zeta 2 {ECO:0000303\|PubMed:11599560}
trEMBL	tr\|I1KNL5\|I1KNL5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G39830.1}

Sequence

Transcript Sequence

>Glyur001789s00033168.1
ATGCTTGCGGCATTTGATAAGGCTTCGGACAAGGTTGGCTCCAAAACCGATCACGAACTCTCCGTCTTCACGCTCGCCATCGGCCTCGTCTTAACTGCCTCTTTCTTCATAGAGATTCTCAAGATGGTAGCAAGAACAACCCCGAGGACAAAGTTGTGTGAGGCACTTGCTGATCAATTGACTAGTATAATTGTTAATGCGATTATGCACATGAGGCACAAGTTTGATGTTGACACACACTTGATAATTGCTCGTTTCTGTCCATTGCTTCTTAGTGGCAGTGAGGAGGAGTTGGTGCATTTACTGAAGGATAATNATGATATGATTAAAGAGGGCGTTCTTAATGTTTTAGCAAAGGCTGGTGGTACTATTCGTGAACAACTTGCAGTCACATCAAGCTCGGTAGACCTTATATTGGACAACCTATGTTTAGAAGGCAGTCGGAGACAGGCAAAGTATGCTGTCCATGCATTGGCTGCAATAACACAGGATGATGGCCTCAAGTCTCTTTCTAAACTTGTAGATATGTTGGAAGAGAAAACACATCTGCCTGCAGTACTTCAGTCTCGGGGGTGTATAGCGCAGACTGCAATGCCTGTCTTTGAAACTAGAGAGAGTGATATTGAAGAATTTATAAGAAACAAGATTCTGAAAAGTGATAGCAAAGAAGATCACAGTAGAACATCTTGGGATGATAAAAGTGATCTTTGTATGCTGAAGATATATGGCATTAAAACCTTAGTAAAGAGCTACTTGACNGTCAAAGATGCCCATGTTCGTCCTGGGATTGACAGTCTTCTGGATATCCTTAGGAACATGCTACCTTATGGTGAAATATCAAAGGACCTACAATCAAGCCCATTTGAGGCTTTTGCTTCTGCAAAGGCCGTTCTTCGTTTGTCAAGGCTTTGGGATCATAAGATTCCTGTTGACCTTTTCCCCTTAACTTTAAGGGCATCTGAGATTAGCTTTCCTCAAGTCAAGAAGGTTTTCTTAAGCAAAGTTCACCAATATATTAAAGACCGCCTTTTGGATGCCAAATATACGTGTGCCTTCTTATTCAACATATTTGGATCCAAGCCACAGGAATTTGCAGAGGCAAAGGCACGACAAGTTTCTGCACAATCTGATGCAAACTCCTTCCGTACCTTGTTCATGCACTTGCTCATAATTCATGTCCCAATGTTGATGAGTGCAAGGATGTTGGAGCATATGATACTATATATACCGTTGCACNTAATACTATCGATGTTACTGCAAAGAGATGAAGGTCCCAAGTCAGAAGTAACTACTGACAAAGAGAAGGAAGTTATATCTACTATCACTTCTATCTTTCGGAATATCAAGCTTTCAGATGATATGGTTGACACATCAAAGACACAGAATTCTCATGCAATATGTGACCTTGGGTTAGCAATAACAAAACGATTAGTGCAGAAGGATGTTGATTTGCAAGAATTGTCTCATCTGGTGTCTCTTCCTCCAATGCTATACAAAGTATCTGAGAAGAAGGAAGGAGATGACAATATGGTATATGGACGGGGAAGGAGGAACATGGTAGGCTTGGATTTGGTGATAGTGATAAGAGCAGTAAAATGGTACGTTAGAGGATTCAACTTTCAGCTGGAGAAGATATTGTTCAGGTTAACCAAATTATGGAGCATAGATGCATTGGCTCATGGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01789	36857	47685	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.775
SRR1783600	control	1.529
SRR1783602	moderate drought stress	2.576
SRR1811619	moderate drought stress	2.846

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.724
DRR006520	Root Summer glycyrrhizin high producing strain	0.816
DRR006521	Root Winter glycyrrhizin high producing strain	2.563
DRR006522	Root Winter glycyrrhizin high producing strain	2.342
DRR006523	Root Summer glycyrrhizin low producing strain	0.762
DRR006524	Root Summer glycyrrhizin low producing strain	0.804
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.260
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.263

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.449
SRR2868004	Drought Stress (root)	1.844
SRR2967015	Control (root)	2.274

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.326
SRR9715740	Leaf	0.375
SRR9715741	Leaf	0.561
SRR9715739	Root	0.133
SRR9715742	Root	0.597
SRR9715743	Root	0.743

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.140
SRR8749028	MeJA induced 9h	4.242
SRR8749029	MeJA induced 9h	1.630
SRR8749030	Uninduced	2.881
SRR8749031	Uninduced	2.167
SRR8749032	Uninduced	1.123

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.758
SRR8400027	Control - Root	3.924