Gene detail information of Glyur001788s00041175 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20190.1 | 5.00E-21 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_003528326.1 | 3.64E-108 | PREDICTED: uncharacterized protein LOC100784802 isoform X1 [Glycine max] |
| trEMBL | tr|K7KZD4|K7KZD4_SOYBN | 1.00E-108 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G03427.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01788 | 18812 | 20958 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 126.710 |
| SRR1783600 | control | 126.214 |
| SRR1783602 | moderate drought stress | 129.458 |
| SRR1811619 | moderate drought stress | 127.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 47.353 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 49.246 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 114.429 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 110.946 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 114.785 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 116.606 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 82.838 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 82.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.028 |
| SRR2868004 | Drought Stress (root) | 1.813 |
| SRR2967015 | Control (root) | 1.472 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.983 |
| SRR9715740 | Leaf | 3.504 |
| SRR9715741 | Leaf | 9.574 |
| SRR9715739 | Root | 14.669 |
| SRR9715742 | Root | 6.507 |
| SRR9715743 | Root | 7.861 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.015 |
| SRR8749028 | MeJA induced 9h | 0.792 |
| SRR8749029 | MeJA induced 9h | 1.404 |
| SRR8749030 | Uninduced | 0.708 |
| SRR8749031 | Uninduced | 2.315 |
| SRR8749032 | Uninduced | 2.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 86.704 |
| SRR8400027 | Control - Root | 137.307 |