Gene detail

Gene detail information of Glyur001782s00031727

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54070.1	7.00E-82	Ankyrin repeat family protein
NR	KEH37407.1	0	ankyrin repeat plant-like protein [Medicago truncatula]
Swissprot	tr\|Q6AWW5\|Y5262_ARATH	7.00E-09	Ankyrin repeat-containing protein At5g02620
trEMBL	tr\|A0A072V6H8\|A0A072V6H8_MEDTR	0	Ankyrin repeat plant-like protein {ECO:0000313\|EMBL:KEH37407.1}

Sequence

Transcript Sequence

>Glyur001782s00031727.1
CTTTTCGCATAGACTTAGACTTATGCGTTGACGACCAAAGGCAACATTATTGCATATTTTTGAAAGGAAGGGGAAAAAAAAATCTTGCGTTTGAGCCGTCTTAAGAGAGTGCTATTCCAAACCCACAGCTCAAGGAAGGAATAGAAATTAGGAACTTTCCTAAGCATTTCTTCTATGTATTAATAATAAATTAATAANGTGTGTATATATATATCCATAGGCTTAGGGTGACCTTCAATCTTTCTACACTATCGACCCTTCTTCCCTCCTTCATTTATCACAATCTTCTGTTTTTTTCTCTCTCCATATATGTTCCTGTTTCTCCTTCCATTTCCTTCCACCTAAGTTCCATACTCTTCTCTCTTTCCTTTTTCGATTATGAGTTCCCTTTGAATTTACTTCGGTATCTTTGATTCATGGTGCTACTATACACCTCAACAAAAACCAGGATCTATATAGTATACAGTAAAAATATTCTAAGTGTTTCCCTGTACAATATATTCTNGAATACTTCCTTTTTAATTAATGTTTGCTCAAACCTACGTACTGACCTTATATTTTTGGTCATTTTAATTTGTGCAGGAGCAAATTAAAGTTCAATCAGTACTATTTCCAGGTGAAAAAGTTATTGNGAAATTATGAACACAATCATTGGAGGACAATCAATTTCAAAGCCACNATACTTTGATGGTACAAATTGCACTGAGTGGAAGGAGCGTATGGAGATATTCATAAAATCCGTGGACTTCAAACTTTGGCTAGTGATCAATAATGGACCGAAAATTCCAAAAAAGATAGTAGAGGGTAGAGAATTNGAGAAATCTGAAGATGAATTCAATGATGAAGACATGAGGAANATGGAACAAGATGCAAAAGCAAAANATATTTTATGTTGTGCNGTGAACCCAGATGCTCTTAGNAGAATTTCAAGATGTAAAACAGCCAAGGAAATGTGGGAGGAGCTNCACAGTACAATTCCAGCAACACAACCACACCCAAAGGCCGTATCAGCTGATCAATATAATGCTCCTAACCTTGACTTTTTAGTCGGAGAAACAAGTACGCTTGCCCTAGAAGGCAATTGGCCAGCAGCAAAGCACATCTTAGACAAAGATAGTAGGCTGAGGCATGCTGCCATAGCAACAGGGTGGCCAACTGTTCTGCATATTGCAGCAGNTGCAAACCACATTCACTTTGTGGAGGAGTTGTTGAAATTACTGGAAGAGGAGCACATTGCATTGCAAGATAGCAAGGGCAACACTGCTTTCAGCTTTGCTGCTGCAGCTGGAAACTTGGAAATTGCAGAGTTATTGCTGCAAAGAAACCCACTCTTAGCAGTAATTAGGGGTGGAAATGGATTTACTCCTATTCAGTTTGCTGCATTGCAGGGAAGATGCAAAATGACACGAGAGAGGAAAGAGCTTGCTTTTGCACGTGATGTGAACAAAGAGACAGCTTTGCATCTCTTGGCTCAAGATCAATGGCCTTTGGATTCTTGTTGTCATTGTCCAGAACATCAGAGTCATTGTCCAGAAGATCAGCAACCCATCATGATCAACCCTGAGGTTGGTAATTTTGGGTTCTTGTCAGAGCTTATTAGTGCTTATCCTAGCTTGATATGGGAAGTGGACAACAAAAACCGAAGTATAATTCACATAGCTGTTTTGCATCGCCATGCAAGCATCTACAATCTCATACATGAAATTGGGCCTATAAAGGATATCCTAGTGACATTTGAAGTTGAAGATGACAAAAACACTCTATTACACTTGGCTGCAAAATTAGCACCACCAGGTCAACTTGAATTAGTTTCTGGAGCAGCTTTCCAAATGTCCCTCGAGTTATTATGGTTTGAGGAGGTGAAGAAGATAATGCCACCAGCATTCATAAAGATGAGAAACTCCAAAGGCTTAACTGCTCAAGAACTATTCACAAGGGAGCACAAAGAGTTGCGAAGAGACGCAGAGTCTTGGATGAAACACACCGCCGAGTCATGCATGCTCATTTCAACNGTCATAGCAACAGGAGTGTTCGCCGCCGCAATTAGCCTACCAGGCGGTACCAACGATAGCACAGGAAAACCAAACTACTTGGAGAAAACATCGTTCTTAGNGTTTGCCCTATCAGACGCATCCGCATTCGTCGCATCCGCGACCGCGATACTAATCTTCTTGTCTATTCTCGTCTCGNGTTATGCAGAGTATGACTTCTACAAGTCACTTCCCTTGAAGCTAATATTTGGATTGATGGCACTATTCATCTCCATCACAAGCATGATGGTAGCATTTGGCAGTGCCTTCTTCATAACATACTACTATGGCTTGAAATGGGTTCCTGGTTTTGTTTCAGCACTTGCGTTTCTACCTATACTGTTGTTTATAGTTTTGCAATTTTCACTTTGGTCGGATATCATTTACTCGACCTACTATTGTAGGACTTTGTTTAAGCCAGTTGGGGATAATCTAGGAAAGATGGCTGTGATTAAGAAATATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01782	15223	25902	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001782s00031727.1	PF12796.2	Ank_2	145	228	2.70E-09
Glyur001782s00031727.1	PF13962.1	PGG	444	555	4.60E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.892
SRR1783600	control	7.937
SRR1783602	moderate drought stress	6.794
SRR1811619	moderate drought stress	6.310

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.460
DRR006520	Root Summer glycyrrhizin high producing strain	0.483
DRR006521	Root Winter glycyrrhizin high producing strain	0.045
DRR006522	Root Winter glycyrrhizin high producing strain	0.025
DRR006523	Root Summer glycyrrhizin low producing strain	0.044
DRR006524	Root Summer glycyrrhizin low producing strain	0.044
DRR006525	Leaf Summer glycyrrhizin high producing strain	59.693
DRR006526	Leaf Summer glycyrrhizin high producing strain	58.345

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.396
SRR2868004	Drought Stress (root)	2.942
SRR2967015	Control (root)	1.524

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.369
SRR9715740	Leaf	21.454
SRR9715741	Leaf	34.683
SRR9715739	Root	1.722
SRR9715742	Root	10.618
SRR9715743	Root	10.681

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.049
SRR8749028	MeJA induced 9h	0.058
SRR8749029	MeJA induced 9h	0.082
SRR8749030	Uninduced	0.224
SRR8749031	Uninduced	0.046
SRR8749032	Uninduced	0.053

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.364
SRR8400027	Control - Root	13.533