Gene detail

Gene detail information of Glyur001780s00035671.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18880.1	5.00E-27	heat shock transcription factor A4A
NR	AGJ83756.1	1.16E-117	heat stress transcription factor A-4a-like protein [Caragana korshinskii]
Swissprot	tr\|Q9FK72\|HFA4C_ARATH	5.00E-49	Heat stress transcription factor A-4c
trEMBL	tr\|R9R6C4\|R9R6C4_9FABA	4.00E-118	Heat stress transcription factor A-4a-like protein {ECO:0000313\|EMBL:AGJ83756.1}

Sequence

Transcript Sequence

>Glyur001780s00035671.1
GAATCATTGGAGCTTTTGGCGAATATGGACAGAAATATGAACTATGCACATTTTGAAAGAAGAAGCTGACAACCTTTTCTATGGGTGTGTTTTATTGGTTCCACTTTCACCTTTGTTCTTATCTATGAGCATTTGAATCTGCAAAAGATTTCACCTTTTGGGTTGTGATTCATCGCCAGCTGGTGCAGTGAAGGTAAGCGTGTGAGCTTTAATTGGAGGATTNGGAAGGTTTGCGAATTGAATTGGGGAAATTGTTGATTGACATTAACTGGGATTGATAAGACCTAGCTAGAAAGGAAAAGGGGAAGGAAAAGGAAGGATTTTTTTTTATTATTGTTTTATTTAGGTTATACTATTTCAGAAAGAAAGCTAAAGGGTTTTTGTGAGACGGCGAAGGAAGTATATACAAAACGGTGTTCGAGGATTCAAGTCTTGTTTTTGTTGAGATTTGTGTTTTTGGNTTGGAGGCTGTGTGATGGAGGAAGCTCAGGGCAGTTCTAGTTCCAGTTCTCTGCCTCCTTTCCTCACCAAGACTTATGAGATGGTTGANGATCCTTCCTCTGATCCCATTGTTTCATGGAGTGCCTCCAATAAGAGTTTNATTGTTTGGAACCCACCAGATTTTGCGAGGGATTTGCTACCAAAATTCTTTAAGCACAATAACTTCTCAAGTTTTATCAGACAGCTCAACACTTATGAGTGGAAAACTTGTGAGATAGAGTTACATTGCTCGAAGGATCGTTTGGAAAAGATGGAACAGAAGCAACAAAGTATGCTCTCTTCTGTTTCCCAGGTGCTGCAGAAACCTGGGGTTGCCTTGAATCTCTGGCCACTGACAGAGAACATGGAAAGAAAACGAAGGCTGCCGAGAAGTGGTCACTCTAGTGACGATGCTAGCGTTGAAGATCCTATGGAAACTTCCCAGGTGTTACCTAGAGAAAATGCTGAGAGTATCTCTTTACTCTCATCAAACATGGAGCGATTGGATCTGATCGAGTCATCCGTGATGTTTTGGGAGAATATTGTACATGAGGCTTGTGACAATTCTCTTCAGAGTCACTCAATCATAGATTTTGATGAATCCACAAGCTGTGCAGATAGTCCAGCTATATCTTGTGTGCAACTAGATGTTGAAATTCAGCCCAAGTCACCGGGAATCGACATGAACTCTGAGCCAGCTGTAGCTGCTGCTGTTCCTGATCCTGTTCCATCANAAGAACAACCTGTTGGAACAACCACTGTGGCTACTGGGGTTAATGACGTGTTCTGGGAACAATTCTTGACAGAAAACCCTGAAGCGCATGCAGAAAGAAAGGATTCAAATGGCAGAAATAATGAAGGAAAACCTGGTGAGCTTGGCAGATTCTGGTGGAGCATTAGGAATGTAAATAACCTTCCAGAACAGATGGGACATTCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01780	56973	58778	-

Gene family

Gene family	subfamily
Transcription Factors Family	HSF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009408 response to heat

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001780s00035671.1	PF00447.12	HSF_DNA-bind	16	93	3.70E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.185
SRR1783600	control	7.225
SRR1783602	moderate drought stress	14.024
SRR1811619	moderate drought stress	13.502

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.449
DRR006520	Root Summer glycyrrhizin high producing strain	25.477
DRR006521	Root Winter glycyrrhizin high producing strain	30.846
DRR006522	Root Winter glycyrrhizin high producing strain	28.736
DRR006523	Root Summer glycyrrhizin low producing strain	48.827
DRR006524	Root Summer glycyrrhizin low producing strain	50.253
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.147
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.699

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.184
SRR2868004	Drought Stress (root)	27.429
SRR2967015	Control (root)	27.649

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.028
SRR9715740	Leaf	40.595
SRR9715741	Leaf	53.891
SRR9715739	Root	15.568
SRR9715742	Root	39.511
SRR9715743	Root	34.661

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.310
SRR8749028	MeJA induced 9h	63.215
SRR8749029	MeJA induced 9h	37.471
SRR8749030	Uninduced	42.026
SRR8749031	Uninduced	42.990
SRR8749032	Uninduced	29.483

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.482
SRR8400027	Control - Root	16.732