Gene detail information of Glyur001780s00035665 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60490.1 | 2.00E-23 | FASCICLIN-like arabinogalactan-protein 12 |
| NR | AFK42841.1 | 1.58E-124 | unknown [Medicago truncatula] |
| COG | YP_003819703.1 | 4.00E-07 | beta-Ig-H3/fasciclin [Brevundimonas subvibrioides ATCC 15264] |
| Swissprot | tr|Q8LEJ6|FLA11_ARATH | 2.00E-46 | Fasciclin-like arabinogalactan protein 11 (Precursor) |
| trEMBL | tr|I3SRE9|I3SRE9_MEDTR | 6.00E-125 | Uncharacterized protein {ECO:0000313|EMBL:AFK42841.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01780 | 34420 | 35355 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001780s00035665.1 | PF02469.17 | Fasciclin | 94 | 231 | 2.80E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 94.011 |
| SRR1783600 | control | 93.366 |
| SRR1783602 | moderate drought stress | 132.635 |
| SRR1811619 | moderate drought stress | 133.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.676 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.916 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.524 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.508 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.433 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 63.898 |
| SRR2868004 | Drought Stress (root) | 114.721 |
| SRR2967015 | Control (root) | 55.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.853 |
| SRR9715740 | Leaf | 3.953 |
| SRR9715741 | Leaf | 0.838 |
| SRR9715739 | Root | 34.377 |
| SRR9715742 | Root | 152.804 |
| SRR9715743 | Root | 126.895 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.076 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.026 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.130 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 248.552 |
| SRR8400027 | Control - Root | 366.815 |