Gene detail information of Glyur001780s00035664 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60490.1 | 1.00E-38 | FASCICLIN-like arabinogalactan-protein 12 |
| NR | AFK33714.1 | 8.55E-154 | unknown [Lotus japonicus] |
| Swissprot | tr|Q8LEJ6|FLA11_ARATH | 3.00E-47 | Fasciclin-like arabinogalactan protein 11 (Precursor) |
| trEMBL | tr|I3S0C2|I3S0C2_LOTJA | 3.00E-154 | Uncharacterized protein {ECO:0000313|EMBL:AFK33714.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01780 | 30738 | 31583 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001780s00035664.1 | PF02469.17 | Fasciclin | 79 | 213 | 4.60E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 70.427 |
| SRR1783600 | control | 69.095 |
| SRR1783602 | moderate drought stress | 36.917 |
| SRR1811619 | moderate drought stress | 37.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.578 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.622 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.665 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.654 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.622 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 59.380 |
| SRR2868004 | Drought Stress (root) | 106.070 |
| SRR2967015 | Control (root) | 56.862 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.556 |
| SRR9715740 | Leaf | 2.218 |
| SRR9715741 | Leaf | 0.294 |
| SRR9715739 | Root | 30.154 |
| SRR9715742 | Root | 59.342 |
| SRR9715743 | Root | 51.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.079 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.114 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 166.170 |
| SRR8400027 | Control - Root | 351.913 |