Gene detail

Gene detail information of Glyur001780s00035661

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18820.1	0	AAA-type ATPase family protein
NR	XP_006594536.1	0	PREDICTED: protein STICHEL-like 3-like [Glycine max]
COG	YP_720719.1	1.00E-61	DNA polymerase III subunits gamma and tau [Trichodesmium erythraeum IMS101]
Swissprot	tr\|F4JRP0\|STIL3_ARATH	0	Protein STICHEL-like 3
trEMBL	tr\|I1M1Q6\|I1M1Q6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G29860.1}

Sequence

Transcript Sequence

>Glyur001780s00035661.1
CTCTCTACTAGTACTAGCCATGGGTTTTTGACTAGTGCTACTATCGTTTTCTTTACAAAGAGAACACTCTCGTGAAGTGCATGTGAAGCTTGCTGCTGAGAGATCTGATGCTTAATAATTCAAAGCCCAAACGGGTCACCTTTCTTATTCTGAATCAGTATGGTACTTCAATTTGCACTTGAGCTTTGAGATAATGGGGTCTTGGCTTCTTCTCTTCTGTTTGCTTGCCTGACCTCAAAATTGTGCCTTTTGGTGTCTAAAGCTGCTTCTGGGGGGCTAGCAGCACTCTGGTCTGGTCCACAAAGTTCACTTCTTTTGGACTCCTGTTTGCTTCAATGGGTTCCACGAAGTATTGGGTTTTGTTTATGGAGAATACGATTCCAAGTTTTGGTGATTGAAAAATTCCTCTTGAAGTGTGTTTTATTATTGGGTCGAATCTTGGTGGTTCTTAGTTCATGGGATAATTGACCATGAGAGTCGCTGTTTCCCTTTTGAAGATATTCTGCTGTCAGACGGGTCGGTGTTCTGATCATGACTAGGGCTATCCGCAATAGGGTACTCAAGGATGCAAATGTTGATATTAGTGATCATCTACGCAACCACATCCATTTAACAAATTGTATTCACTTGAAGAACCATATGCACAGGAACAGCCCCATACTGGCTGATAGGTCAATCATGAGGGACCTTGTTGTGCTGCAGAGATCACGCTCTCTCAGGGACCCTTCTGCAAGTCCTCCCTCATGGCACTCTCCTTCTGTAGTTGACCTGCTTTTCAAAAGAGCTGAGAATGATGCCATGGCTCAGGATGGAAGAAGGTCTGTTGGTGTCGACCGCAGGAAGGAAGGTAGGAGATTGTCTGGAACTGGAACCTCACCACCCTTGGTGAGTAAAAGTACATCAAGAGTTGCCCCAGGTGAGGCTAGTAGGGGCGATGACGGGGTACCGGCAACTAGTGAACGGAGTANCAGGAGTGGAATGGGGGATGGGAGGAGAGTTGGGAGAGAAGAATCGGGTAGGAAGAGTATTAGGCCTGATTATTTGGAATTTAGTCAAGGGCAACCTCTCAATGAGGCTGGCAAAAGTTTGGCTGAAGATGTTATTTCAAGGCACTCTNAATCTAAAGAGAGAAGGAGCAAACAGAGGGGGAAGAATGTTCAAGATGTTCATGTTAAGACTCTTTCTGAGCAGCTGAATGATGTTCCGTTGGATAGTGACGATTTAGCATCATCAAACATTCATTTTCGTGGAAGGCTTCCGAGACAGGAGAAAATCATCAAGGAGGCAGAAGCCAGCATGCGCGGTCATGGAAGTGGAATGAATAGGGTAAAAAGGCGTAAATTCCGAAGCGCAAGAAGAGCTCGGGTTGCTACAGCATCAAGAGATATTGGAGCTGAGAATGAATTGTCTGTGGCTTCCAACTCANTCGCTCAGGGTTCAGCCCACCAGAAATATCACTCGGAGGAGGTTGACGATTATGCAGATGAAAATGTTACTAGGGCTCCAAAAAATGGATGTGGTATTCCTTGGAATTGGTCAAGAATTCATCATAGAGGTAAAACATTCCTTGACATGGCTGGAAGAAGTTTGTCTTGTGGTTTATCTGACTCAAGGTTAAAGAGAGGGACATTAACTGCCAATGGAAGAAATATTTCTNAGATGCCTGTGGCATCTGAGCACTCAAGTTCATGTACTAAATCTGATGCAGAGGCACTGCCTTTACTAGTTGATGCGTCTGGATCTCATGGAAGCACTGAAAANGCTTGTTGGGACCGTGACTATTCTGGTGAGCTACGTATTTTTGGTGATAATTTATTCAAGCAAGATATCGATTCTGACCTTGCTTCTGAAGCTAGATCTGGTGACCAACATAAGTTTAGAGGGAATCGCCATAGTAGACACCAAAGCTTGACACAAAAATATATGCCACGAACTTTCAGGGATATGGTTGGACAGAATTTAGTGGCACAAGCTCTTTCAAATGCAGTAATGAGACGGAAAGTTGGATTGTTGTATGTGTTTTATGGTCCCCATGGCACTGGAAAAACTTCCTGTGCTCGTATATTTGCCAGAGCTTTGAATTGTCATTCTTCAGAACACCCNAAACCTTGTGGCTTTTGCAATTATTGCATAGCGCATGATATGGGCAAGAGTAGAAATATAAGGGAAGTTGGTCCAGTCAGTAATTTTGACTTTGAGAGCATCATGGATCTACTCGACAATATGATTGTTTCCCAGCTTCCATCACAGTACAGAGTGTTTATTTTTGATGATTGTGATACTCTGTCAGCAGATTGTTGGAATGCTATNTCAAAGGTCATTGATCGAGCACCCAGGCGTGTGGTTTTTATCCTTGTCAGTTCTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGCTGAAGGATGCAGATATTGTACATACACTGCANTGGATTGCAACCAAAGAAGGTCTAGAAATTGATAAGGATGCCCTGAAACTCATTGCATCGAGATCAGATGGATCACTGAGAGATGCTGAAATGACCCTTGAACAACTTAGTTTGCTTGGGCAGAGAATATCTGTTCCTCTTGTTCAGGAACTGGTAGGGCTTATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCTGCAGACACAGTTAACACTGTGAAGAATTTGAGAGTGATCATGGAAACTGGTGTTGAACCATTAGCTTTAATGTCACAACTTGCTACAGTAATTACTGATATACTTGCCGGGACCTANGATTTTACAAAAGAAAGGCGAAGAAGGAAGTTCTTCCGGAGACAACCACTGTCCAAAGAAGACATGGAAAAGCTTCGCCAAGCTCTGAAAACTTTATCTGAGGCCGAGAAGCAGTTGAGGATGTCCAATGACAAGCTAACGTGGTTGACAGCTGCATTGCTTCAACTTGCTCCTGACCAGCAATATGTGTTGCCTACTTCATCTGATAATAGTTTCAATCACAGTCCCTTGCCTCTAAAAAATGGAGATGTAAAAGAAGCTGCTAGAATCACTGGTAATCCTGTTGAAATTCCTAACAAAGNGAGACGAATGTCAATGGATGCTAGAATAGAAAATTTTCATGCTGGAAGTTCAGCAGATGGTATGACAAAGGGTCATAGTTCAGAAAAAAGAAGACTTAGTGTGTCTGGTTTAGCTCCTCAACATACTTATTCGCATGCCACTGATAAGATTAGGATAAATGAAAGGCAGACTTTGGGTAAAAACCGTAAAGAAATTGAAGAGATATGGTTAGAGGTGCTAGAGAGGATTCAAGTTACTGGGCTCAAAGAGTATTTGTATAAAGAAGGCAAGCTGATTTTTGTTAGTTTTGGGGCAGCTCCAACTGTGCAGCTAATGTTTAGTTCTCAACTTTCCAAATCTACTGCTGAGAAGTTCACTGGTCACATCTTACAAGCATTTGAATCTGTCCTNGGATCTTCTGTAACCATAGAAATTAGATGTGAGTCAAATAAAGATGCAGGCTCAGCTGCTCAACTGCCTCTGATATTGCCTGCTAGCAATGATGGTTCGTCTCATATTAGAGACTTGAATGACGTTGGCACTGANGTTCATCCTTCACTAACTGATTCTGTCGAAAAGAGAAGGGGTGAAATTGTAGAAGAAGCAGCTTCTCATATGGAACACAAGAATAATGAGCAGCAGGCTGATGCCCGTGCAACATATAAAAGTCTAGAAGGTACAAGTATGGGNCAAGCGTCAACTTCCCAAAAAATGCCAATTCTTAAGTCGCATTTAGACCGAAAAAAGCTTAGGGAGCAAGGTCAAAGTCGAAGTCTTGTAAGAAGTAAGGTATCTCTTGCTCATGTAATCCAGCAGGCNGAAGGTCAGCGAAGTGGGTGGTCAAAACGCAAAGCAGTTTCTATTGCTGAAAAGCTTGAACAAGAGAATCTGAGACTGGAGCCAAGATCAAGGAGCTTACTANGCTGGAAAGCATCTAGAGCAACCCGTCGGAAGTCTGGGAATGTTGCTGACGAGCTTCCTGCAATAGAAGAAGAAACCTTTCATCCTCACTAC

Protein Sequence

>Glyur001780s00035661.1
MTRAIRNRVLKDANVDISDHLRNHIHLTNCIHLKNHMHRNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVDLLFKRAENDAMAQDGRRSVGVDRRKEGRRLSGTGTSPPLVSKSTSRVAPGEASRGDDGVPATSERSXRSGMGDGRRVGREESGRKSIRPDYLEFSQGQPLNEAGKSLAEDVISRHSXSKERRSKQRGKNVQDVHVKTLSEQLNDVPLDSDDLASSNIHFRGRLPRQEKIIKEAEASMRGHGSGMNRVKRRKFRSARRARVATASRDIGAENELSVASNSXAQGSAHQKYHSEEVDDYADENVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSLSCGLSDSRLKRGTLTANGRNISXMPVASEHSSSCTKSDAEALPLLVDASGSHGSTEXACWDRDYSGELRIFGDNLFKQDIDSDLASEARSGDQHKFRGNRHSRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCHSSEHPKPCGFCNYCIAHDMGKSRNIREVGPVSNFDFESIMDLLDNMIVSQLPSQYRVFIFDDCDTLSADCWNAXSKVIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIVHTLXWIATKEGLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTXDFTKERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPLPLKNGDVKEAARITGNPVEIPNKXRRMSMDARIENFHAGSSADGMTKGHSSEKRRLSVSGLAPQHTYSHATDKIRINERQTLGKNRKEIEEIWLEVLERIQVTGLKEYLYKEGKLIFVSFGAAPTVQLMFSSQLSKSTAEKFTGHILQAFESVLGSSVTIEIRCESNKDAGSAAQLPLILPASNDGSSHIRDLNDVGTXVHPSLTDSVEKRRGEIVEEAASHMEHKNNEQQADARATYKSLEGTSMGQASTSQKMPILKSHLDRKKLREQGQSRSLVRSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLXWKASRATRRKSGNVADELPAIEEETFHPHY

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01780	21750	29074	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006260 DNA replication

cellular_component
GO:0009360 DNA polymerase III complex

molecular_function

GO:0003677 DNA binding

GO:0003887 DNA-directed DNA polymerase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001780s00035661.1	PF13177.1	DNA_pol3_delta2	474	632	2.00E-20
Glyur001780s00035661.1	PF12169.3	DNA_pol3_gamma3	688	807	1.70E-06
Glyur001780s00035661.2	PF13177.1	DNA_pol3_delta2	474	632	2.00E-20
Glyur001780s00035661.2	PF12169.3	DNA_pol3_gamma3	688	807	1.70E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.310
SRR1783600	control	6.445
SRR1783602	moderate drought stress	5.765
SRR1811619	moderate drought stress	5.588

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.962
DRR006520	Root Summer glycyrrhizin high producing strain	5.087
DRR006521	Root Winter glycyrrhizin high producing strain	2.308
DRR006522	Root Winter glycyrrhizin high producing strain	2.329
DRR006523	Root Summer glycyrrhizin low producing strain	8.443
DRR006524	Root Summer glycyrrhizin low producing strain	8.435
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.555
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.545

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.876
SRR2868004	Drought Stress (root)	9.825
SRR2967015	Control (root)	14.995

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.313
SRR9715740	Leaf	8.519
SRR9715741	Leaf	7.668
SRR9715739	Root	1.149
SRR9715742	Root	11.404
SRR9715743	Root	9.923

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.884
SRR8749028	MeJA induced 9h	4.615
SRR8749029	MeJA induced 9h	2.444
SRR8749030	Uninduced	0.577
SRR8749031	Uninduced	0.303
SRR8749032	Uninduced	0.637

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.992
SRR8400027	Control - Root	18.298