Gene detail information of Glyur001778s00033618 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G07580.1 | 4.00E-18 | Integrase-type DNA-binding superfamily protein |
| NR | XP_007145470.1 | 1.91E-64 | hypothetical protein PHAVU_007G241800g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LY05|EF106_ARATH | 2.00E-36 | Ethylene-responsive transcription factor ERF106 |
| trEMBL | tr|V7BHU0|V7BHU0_PHAVU | 7.00E-65 | Uncharacterized protein {ECO:0000313|EMBL:ESW17464.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01778 | 35203 | 35886 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001778s00033618.1 | PF00847.15 | AP2 | 131 | 182 | 5.90E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.789 |
| SRR1783600 | control | 3.603 |
| SRR1783602 | moderate drought stress | 10.205 |
| SRR1811619 | moderate drought stress | 10.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.184 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.942 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.631 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.018 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.067 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.231 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 51.505 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 49.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.045 |
| SRR2868004 | Drought Stress (root) | 3.739 |
| SRR2967015 | Control (root) | 11.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.487 |
| SRR9715740 | Leaf | 26.507 |
| SRR9715741 | Leaf | 34.367 |
| SRR9715739 | Root | 0.652 |
| SRR9715742 | Root | 0.673 |
| SRR9715743 | Root | 1.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.304 |
| SRR8749028 | MeJA induced 9h | 43.908 |
| SRR8749029 | MeJA induced 9h | 47.241 |
| SRR8749030 | Uninduced | 10.022 |
| SRR8749031 | Uninduced | 19.160 |
| SRR8749032 | Uninduced | 20.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.082 |
| SRR8400027 | Control - Root | 5.756 |