Gene detail information of Glyur001776s00029319 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G64090.1 | 1.00E-79 | |
| NR | KEH31235.1 | 0 | hyccin protein [Medicago truncatula] |
| trEMBL | tr|A0A072UZE2|A0A072UZE2_MEDTR | 0 | Hyccin protein {ECO:0000313|EMBL:KEH31235.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01776 | 55052 | 56302 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001776s00029319.1 | PF09790.4 | Hyccin | 85 | 277 | 1.40E-61 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 30.801 |
| SRR1783600 | control | 30.494 |
| SRR1783602 | moderate drought stress | 57.362 |
| SRR1811619 | moderate drought stress | 57.622 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.619 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 30.087 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 60.401 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 58.091 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 62.097 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 56.338 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.141 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.581 |
| SRR2868004 | Drought Stress (root) | 25.562 |
| SRR2967015 | Control (root) | 32.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.299 |
| SRR9715740 | Leaf | 10.076 |
| SRR9715741 | Leaf | 12.580 |
| SRR9715739 | Root | 29.038 |
| SRR9715742 | Root | 23.124 |
| SRR9715743 | Root | 25.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.283 |
| SRR8749028 | MeJA induced 9h | 11.007 |
| SRR8749029 | MeJA induced 9h | 24.331 |
| SRR8749030 | Uninduced | 9.552 |
| SRR8749031 | Uninduced | 9.686 |
| SRR8749032 | Uninduced | 16.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.841 |
| SRR8400027 | Control - Root | 22.783 |