Gene detail information of Glyur001776s00029317 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G36050.2 | 4.00E-170 | Endoplasmic reticulum vesicle transporter protein |
| NR | XP_004504780.1 | 0 | PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cicer arietinum] |
| Swissprot | tr|Q9T042|PDI54_ARATH | 2.00E-18 | Protein disulfide-isomerase 5-4 (Precursor) |
| trEMBL | tr|V7CPA9|V7CPA9_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW31085.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01776 | 35647 | 42757 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001776s00029317.1 | PF13850.1 | ERGIC_N | 7 | 102 | 9.90E-35 |
| Glyur001776s00029317.1 | PF07970.7 | COPIIcoated_ERV | 149 | 363 | 4.10E-76 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 34.871 |
| SRR1783600 | control | 35.165 |
| SRR1783602 | moderate drought stress | 27.871 |
| SRR1811619 | moderate drought stress | 27.754 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 40.181 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 39.787 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 33.039 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 32.297 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 39.736 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 39.734 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.010 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 71.686 |
| SRR2868004 | Drought Stress (root) | 75.163 |
| SRR2967015 | Control (root) | 67.733 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 54.422 |
| SRR9715740 | Leaf | 43.318 |
| SRR9715741 | Leaf | 65.206 |
| SRR9715739 | Root | 7.388 |
| SRR9715742 | Root | 28.018 |
| SRR9715743 | Root | 24.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 81.943 |
| SRR8749028 | MeJA induced 9h | 61.937 |
| SRR8749029 | MeJA induced 9h | 82.468 |
| SRR8749030 | Uninduced | 91.680 |
| SRR8749031 | Uninduced | 228.543 |
| SRR8749032 | Uninduced | 125.931 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 63.995 |
| SRR8400027 | Control - Root | 56.384 |