Gene detail information of Glyur001772s00032264 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G50575.1 | 3.00E-42 | Putative lysine decarboxylase family protein |
| NR | XP_003532159.1 | 1.38E-63 | PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL5-like [Glycine max] |
| COG | YP_458941.1 | 6.00E-11 | hypothetical protein ELI_10260 [Erythrobacter litoralis HTCC2594] |
| Swissprot | tr|Q84M85|LOGL5_ORYSJ | 1.00E-07 | Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL5 |
| trEMBL | tr|I1KYF9|I1KYF9_SOYBN | 5.00E-64 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G43700.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01772 | 58496 | 58843 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001772s00032264.1 | PF03641.9 | Lysine_decarbox | 5 | 89 | 1.50E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.214 |
| SRR1783600 | control | 7.459 |
| SRR1783602 | moderate drought stress | 7.337 |
| SRR1811619 | moderate drought stress | 6.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.332 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.545 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.241 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.268 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.725 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.698 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.203 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.195 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.228 |
| SRR2868004 | Drought Stress (root) | 36.529 |
| SRR2967015 | Control (root) | 29.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.723 |
| SRR9715740 | Leaf | 24.162 |
| SRR9715741 | Leaf | 5.197 |
| SRR9715739 | Root | 4.046 |
| SRR9715742 | Root | 0.677 |
| SRR9715743 | Root | 0.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.982 |
| SRR8749028 | MeJA induced 9h | 6.419 |
| SRR8749029 | MeJA induced 9h | 9.422 |
| SRR8749030 | Uninduced | 10.953 |
| SRR8749031 | Uninduced | 8.500 |
| SRR8749032 | Uninduced | 7.926 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.351 |
| SRR8400027 | Control - Root | 12.683 |