Gene detail

Gene detail information of Glyur001772s00032263

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07040.1	1.00E-85	NB-ARC domain-containing disease resistance protein
NR	XP_004506662.1	0	PREDICTED: disease resistance protein RPM1-like [Cicer arietinum]
COG	YP_007058022.1	6.00E-14	hypothetical protein Riv7116_5077 [Rivularia sp. PCC 7116]
Swissprot	tr\|Q39214\|RPM1_ARATH	3.00E-100	Disease resistance protein RPM1
trEMBL	tr\|A0A072UX30\|A0A072UX30_MEDTR	0	LRR and NB-ARC domain disease resistance protein {ECO:0000313\|EMBL:KEH33986.1}

Sequence

Transcript Sequence

>Glyur001772s00032263.1
ATGGTACTGGAAATGTTAGGATCATGCACTTGGGAGTATTTGATTCCACTATTAAAAGCAGGAGTCGTTATGATCACGAGTGTCCCAAAAGAAGTTGAAGTCCTCACAGAGGAACGGGAAAAAATTGGTGTCCGCATCAGAGAAGCAGATAGAGTGGCTGCAGCAGCGGAAGAAGGCGAGTCACGTGAAGGAATGAAAAGAAGGGCCACGCAGCTGAGAACAATAGATTTTCGCATAGAAGATGTCATTGATGAATGGAATTCGTGTCTTCTACATGAAAGGGAGATTGCGAAGATAAATAACAAAGAGGAAGGGCAGCCTCATGATCGTGATCATGGTCATGGATGTGTGGCATTCCCCTGTGAGAATCCTAACTTGGTCAACATTATGTGCTATGACCGTCTTCGAATAGCACTCAATGTTCAAAGAATCAAATCAGATCTTAGTGAAATCAACAAGAGAACCGAAGAAGAGAACAAATCTTCTTCAGAACAGGTACAAGACCAAGAAAAAAGCAGCAATTCTACTTCTACAAGAAACCCAGACGTGACATGGAAGAAGCTTCAACGGAACCCTACTATTTCCGAGGACCAAACCAAAACCACCGTGGGCTTCGCCTTCGAAGCCGCAAGTGATAAATTGATTGGTTGGTTGGAAGATGGAAGGACAGAGTGCACTGTCATGGTTGTGGCAGGAATGCCGGGGCAAGGAAAAACCATACTCGCCAAGAAGATATTCCACAACGAGAAAGTGGTTGAGAGGTTCGAGTGCAGCGCGTGGATCAACGTGTCTGATTACGACGACCCAAAGCAATTCTTCAGGTTCATGCTGCAACAGTTTTACGATCAAGTAGAGGAGAGTCCTCCTTATGGCCTTCCCACAATGGTCCTACAATCACTAAAAAAGGAAGTGAAGAAATACTTGCGCAAAAAGAGGTTCGTTCTCTTCTTTGATGACGTGTGGAATAAGAATTTCTGGCGGGAAATTGAACATGCCGTGAGTGATAACAGAAATGGGAGTAGGATAATTATAACCACCAGGAACAAAGAAGTTGGGAAGGCTTGTCAGATAGCTACCATTGCTGAAGTGCATGAAATGCAGCTCTTAACTGAAAAGGAATCTTTGGAGCTGTTCCGTCAAACGGTGTCAAGACCTGGCAGCAAAAGAGGGCTTTCTCCTAAACAGATTAAGGAACTATCTAGTGAGATTTATGAAAGATGTAAGGGTTTGCCACTGGGAATTGTGGCCATTGGTAAGCATGTCTCTGTCCATCAGAAAGATGCATTTAAATGGAAAAGCAAAATTGAAGAGACAGATATTAAAGAAACATTAAGTTTAAGTTATGATAATCTGCCTCACCATCTTCAGCCATGCTTCTTGTATTTTGGAATCTACCCTCAAGATTATGAGGTTAAATCGAAGAGACTGATTCGGCAGTGGATAGCAGAAGGGTTTGTAAAGTATGAAATGAAGAAAACATTGGAGGAAGTTGCGGAAGAATATTTAACAAGCTTGGTCGATAGAAATTTGGTGCAAGTATCTTCGTTTACCATTGATGGCAAACCTAGAAGTTGTCATGTTCATTACCTGGTGCATGATATGATCCTTAGAAAATTTGAGGATTTATCTTTCTGCCGGTGTATTAATGAAGACAGTCATTCCCAGCCAGACGAAAGCAAGTTAACACGGCGCCTATCAATAGCAACCAATTCCATTGAAGATTTACCTAAGTTTTTTGATGACATAGCAGATAAGATTGAAAGCCCATTCATTCGGTCATTGCATTTCTTCACAAAGGAAAAACTGCCTGAACCCTTTGTGAGGAGAATCCCTGCAAAATACAGGTCACTGAAGGTACTAGATTTTGAAAATTCTCAACTGTCTTATGTTGTTGAGAATTTGGGGAATTTGATCAACTTGAAGTATTTAAGCTTCAGGCATGCAGATATACAAAGTCTTCCGAAATCCATTGGCGAACTCCAGAACCTAGAGACCTTGGATATAAGACAAACGGGTGTGAATGAGCTGCCAAAGGAGGTTAGCAAGCTTAGAAAGCTACAACATCTTTTGGCCCTGGTTCAATTGAAGGATGGTATTGGAGGCATGAGATCCCTACAAACGCTACGTGGTGTGAAAATAGACAATGGAGGAGGGTCAGACTCAGTAGGCCTAATTGAAAAAGAGCTGGGAAAGCTGTGGCAGATAAGGGATTTTAGATTGAGTAATGTTGGGGAAGAACACGGAAGTGCTCTATGTTGCTCAATAAATAAAATGCAGCACCTGGAGAAACTACATATTGTTGCAAAGTCTGAAAATGAAGTAATTGGTCTTCAAGGTCTGAAAAAGCTCCCCATGCTTCAGAAGCTTCGCCTCAAGGGGAAGTTAAATAAGTTGCCCGAGTGGGTTCCAGATCTCGTACGTCTTGTTAAGTTGATCCTGTCTGGCTCCAAGTTAACTGATGATCCACTGAATTCACTGAAAGACATTCCAAACTTGTTGTTCCTCTCCCTCACCAATGATGCTTATGAAGGTGAAATTTTGCATTTTCAAGATGGAGACTTTGAGAACCTAGAGGAACTAGAACTCGGATCTTTACATGGCTTGAGTTCCATCACTATCGACAGCAAAGCACTGACTTCTCTGAAAAAGCTCGAGTTAAGGGACATCCCCCAACTCAAGACGGCACCCCATGGCATCCAACACCTAGAGAAAATTGAAGATCTCAACATTCAGAATATGCCAACTGAATTTGAGCAGAGCATTGCTCCTGATAGAGGACAAGAGCTGCAGATCATCAAGCATGTGCCCCATGTAAGAATTAATGACTATACGCTTCATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01772	46939	57014	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001772s00032263.1	PF00931.17	NB-ARC	209	488	3.90E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.844
SRR1783600	control	2.907
SRR1783602	moderate drought stress	1.711
SRR1811619	moderate drought stress	1.717

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.602
DRR006520	Root Summer glycyrrhizin high producing strain	0.607
DRR006521	Root Winter glycyrrhizin high producing strain	0.275
DRR006522	Root Winter glycyrrhizin high producing strain	0.206
DRR006523	Root Summer glycyrrhizin low producing strain	0.007
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.392
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.391

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.355
SRR2868004	Drought Stress (root)	10.130
SRR2967015	Control (root)	8.041

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.255
SRR9715740	Leaf	0.058
SRR9715741	Leaf	0.068
SRR9715739	Root	0.423
SRR9715742	Root	0.000
SRR9715743	Root	0.001

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.448
SRR8749028	MeJA induced 9h	1.182
SRR8749029	MeJA induced 9h	0.302
SRR8749030	Uninduced	0.817
SRR8749031	Uninduced	1.157
SRR8749032	Uninduced	0.292

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.237
SRR8400027	Control - Root	4.035