Gene detail

Gene detail information of Glyur001772s00032260

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07040.1	4.00E-90	NB-ARC domain-containing disease resistance protein
NR	XP_004506663.1	0	PREDICTED: disease resistance protein RPM1-like [Cicer arietinum]
COG	YP_007068304.1	9.00E-13	adenylate cyclase [Calothrix sp. PCC 7507]
Swissprot	tr\|Q39214\|RPM1_ARATH	2.00E-113	Disease resistance protein RPM1
trEMBL	tr\|V5TIM6\|V5TIM6_CICAR	0	NBS-LRR protein {ECO:0000313\|EMBL:AHB64357.1}

Sequence

Transcript Sequence

>Glyur001772s00032260.1
ATGCATCCAGCAGAGAAAAACAGAGATATTCTGTCTAAAAATGCGCAAAATGCAGTCTCCTTCGTTCACGATCATTTGCTCCAACTATTAATGGAAGTAGGCAACACGGTTGGGGTTGTGCCAGAAGAAGTTGAAGAAATGAAAGATGAACTGAGAAAGATTCAAGTCTTCCTCCAAGATGCAAATAGGTTGGTAGCAGCTGAAGGAGTCTACAGAGATGCCGAAATAAAAAAACGGGGAAAGCAGCTGATAGAAGCAGCTTTTCGCTTGGAAGATGTCATTGACGAGTATGTGATCTGTGAGGAACAACAGCAGCCTCGTCGTGATCCAGGATGTGCAGCTTCATTATCCTTCTGTGAGGTTTCCCACTTCATCAAGACCATGATCCTTCGTCATCAAATTAGGAGCAGGTATCGGGACTTTAAATCACGAGTTCGTGAAATCAAACAAATAACTGCCGATGTGGTGGAATTTGACGCGCCACGTGATGGGTTGGATCGGGTTGGTTCGTTGGTAGTGGCAGTACTAAGCAATTTTATTTTTAGGAGAAACCAATACGCCGCCACCGCCAGATTGCAAAGTGCAAATGCGAGCTCTGACAATGAAGGAATGTTACCGATGGACTCTGACGATAGTGCCTCATCGCAGAACCTTGGAGAGGATGCTCCTTACACTGAGGCAGCTGAAACTGTGGGATTTGAGGCCGAGCCAAGTTATAAATTGGTTAGAGGTAGAATTGTTGGCGGAGTGGCTAACGCCTCGTTTCGAGAGAATGATGAACCTCCTTACATCGAGGAAGCTCAAATTGTGGGCTTTGACGAGCCAAGTCATAAATTGGTTAGTTGGTTGGTAGAGGGAAGAGCAGAGCGCACTATTGTCTCGGTGGTAGGAATGGGAGGTGTGGGAAAAACCACTCTTGCCAAAAAAGTTTTTAACACCAAAGAAGTCGTCAAGCACTTTGATTGTCATGCATGGATCACAGTGTCTCGCTCATACACAATTGGAAGGTTGCTGGGGGACTTGTTGTGCAAGTTCTATGAACAAAAGGGGGAGTATCCTCCTCGGGATATCTTTGAAATGGATGGAAGTTCATTGACTAATGAGGTGACAAACTACTTGCATCAAAAGAGGTATGTTGTCTTCTTTGATGACATATGGAATACAGATTTCTGGGATAAGATTAAGTTTGCTTTAATTGACAATATGAAAGGAAGTAGGATATTTATCACTACTAGGAGCATGAATGTTGCAGTGTCTTGTAAAAGATCTTCTTGTGTTGAAGTGTATAAGCTACAACCTTTAAATCTTAAAAGATCTCTAGAGCTGTTCTATACGAGGGCATTCGCATCTGAATTTGAGGGAAATTGTCCAAAAGATCTCAAAGATATATCTTATGAAATTGTTGACAAGTGCAATGGTCTACCACTAGCAATTGTGGCCATTGGTGATCTTTTAGCTGGCAAAGCAAAAAATGAATGGAAAAGTTTTAGTCAAAAGCTAAGTTCAGAGCTACAAAAGAATTCTCATTTATATGGTATAGCAGATAGTTTTAGTTTGAGTTATGATGATTTGCCTTCCATTCTCCAACCATGCCTATTGTATTTTGCAATATATCCTCAAGCCTACGAAGTTAAATCGAAGAAACTGATTCGGCAGTGGATAGCTGAAAGGTTTGTCAAACACGAAAGTGGGAGAACTTTGGAGGAAGTTGCAGAAGTGTATTTAGCAGAGTTGATCAATAGAAGTTTGGTGCAAGTATCTTCGGTTAGCATTGATGGTAGAGTTAAAGGTTGTCGTGTCCACACCATATTACATGATATGATCCGAAGAAAAGTTGAGGATTTAAGTTTTTGCAGCTTTATTAGCAAAGATGGTGAGTCATCCTTAAGTGGGATAATTCGGCGCCTATCAATAGCAACCATTTCCGACGATTTAGTGGCTAATATTGAAAGCTTGCACGTTTGGTCGTTGCTCTTTTTCACAGAGGAAGAATTACCTGAACATCTATTGGGGACAATCCTTACAAAATACAAGCTATTGAAGCTACTTGATTTTGAAAGTGCTGGATCGTTTGATGTTCCTGAAAACTTAGGGGATTTAATTCACTTGAAGTATTTAAACTTCAGGAATACAGAAGTACAAAGTCTTCCGAAATCCATTGGCAATCTCCAGAACCTAGAGACCTTGGATCTAAGACAAACCGCTGTGAGTGAGATGCCAAAGGAGGTTAGCAAGCTTAGAAAGCTACGACATCTTCTGGGCAACAAGTTGTGTTTGATTCATTTGAAGGGTGGTATCGGAGAGATGACGTCCCTACACACGCTAAGTGAAGTGCAAGTAGATGAGGATGGAATAGAGCTAATTAGAGAGCTGGGAAAGCTGACACAGTTAAGGAAGTTGAGCTTGTTTGGTGTGAGGGAAGAACATGGAACCGCTCTATGCTCCTCCATAAGTGAGATGCAACACTTGGAGAAACTACACATTGAAACAAAATCCGAAGATGCAGCCATTGATTTGAGTCTTGTTTCATGCCCACCCTATATGCTTCGAAAGCTTCGCCTACACGGGAAGTTAAACAAGTTGCCATGGTGGATTCCACAGCTTCATAATCTTGTTGAGTTGAGCTTGTCACACTCCCGGTTAACTGATGATCCGTTGAAATCACTAAAAGATCTACCAAACCTGCTGCTGCTCAATCTAGCAGCTCATTCATATGAAGGTGAATGTTTGCATTTTCAAGAAGGAGGGTTCCAGGTGCTAAAGGAACTAGGCCTCAGATATTTGCATGGCTTGAGTTCCATCATTATTGATGAAGGAGCAGTGTGTTCTCTGAAGGAGCTCACGTTTATGAAAATCCCTAAGCTGAAGAAGGCACCCTCTGGCATGCTCCAGTTACAGAAACTTGAAGTTCTTAAAACTCATTTTATGCCAACTGAATTTGAGCAGAGCATTGCTCTATTGACACAACTCGTACCAAAGCTTCAAGCTTTCCATGTCATCAATATGCCTTATGAGTTTGAGCAAAGCATTGATCGTGCTAGAGGTCAACAACACCAATGGATCNTTGAGCAG

Protein Sequence

>Glyur001772s00032260.1
MHPAEKNRDILSKNAQNAVSFVHDHLLQLLMEVGNTVGVVPEEVEEMKDELRKIQVFLQDANRLVAAEGVYRDAEIKKRGKQLIEAAFRLEDVIDEYVICEEQQQPRRDPGCAASLSFCEVSHFIKTMILRHQIRSRYRDFKSRVREIKQITADVVEFDAPRDGLDRVGSLVVAVLSNFIFRRNQYAATARLQSANASSDNEGMLPMDSDDSASSQNLGEDAPYTEAAETVGFEAEPSYKLVRGRIVGGVANASFRENDEPPYIEEAQIVGFDEPSHKLVSWLVEGRAERTIVSVVGMGGVGKTTLAKKVFNTKEVVKHFDCHAWITVSRSYTIGRLLGDLLCKFYEQKGEYPPRDIFEMDGSSLTNEVTNYLHQKRYVVFFDDIWNTDFWDKIKFALIDNMKGSRIFITTRSMNVAVSCKRSSCVEVYKLQPLNLKRSLELFYTRAFASEFEGNCPKDLKDISYEIVDKCNGLPLAIVAIGDLLAGKAKNEWKSFSQKLSSELQKNSHLYGIADSFSLSYDDLPSILQPCLLYFAIYPQAYEVKSKKLIRQWIAERFVKHESGRTLEEVAEVYLAELINRSLVQVSSVSIDGRVKGCRVHTILHDMIRRKVEDLSFCSFISKDGESSLSGIIRRLSIATISDDLVANIESLHVWSLLFFTEEELPEHLLGTILTKYKLLKLLDFESAGSFDVPENLGDLIHLKYLNFRNTEVQSLPKSIGNLQNLETLDLRQTAVSEMPKEVSKLRKLRHLLGNKLCLIHLKGGIGEMTSLHTLSEVQVDEDGIELIRELGKLTQLRKLSLFGVREEHGTALCSSISEMQHLEKLHIETKSEDAAIDLSLVSCPPYMLRKLRLHGKLNKLPWWIPQLHNLVELSLSHSRLTDDPLKSLKDLPNLLLLNLAAHSYEGECLHFQEGGFQVLKELGLRYLHGLSSIIIDEGAVCSLKELTFMKIPKLKKAPSGMLQLQKLEVLKTHFMPTEFEQSIALLTQLVPKLQAFHVINMPYEFEQSIDRARGQQHQWIXEQ

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01772	41976	46892	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001772s00032260.1	PF00931.17	NB-ARC	277	562	2.70E-74
Glyur001772s00032260.1	PF12799.2	LRR_4	703	740	5.40E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.596
SRR1783600	control	4.567
SRR1783602	moderate drought stress	8.469
SRR1811619	moderate drought stress	8.540

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.902
DRR006520	Root Summer glycyrrhizin high producing strain	3.858
DRR006521	Root Winter glycyrrhizin high producing strain	1.032
DRR006522	Root Winter glycyrrhizin high producing strain	1.080
DRR006523	Root Summer glycyrrhizin low producing strain	2.830
DRR006524	Root Summer glycyrrhizin low producing strain	2.781
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.182
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.181

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.275
SRR2868004	Drought Stress (root)	4.084
SRR2967015	Control (root)	5.353

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.087
SRR9715740	Leaf	0.312
SRR9715741	Leaf	0.043
SRR9715739	Root	1.392
SRR9715742	Root	0.000
SRR9715743	Root	0.294

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.867
SRR8749028	MeJA induced 9h	1.734
SRR8749029	MeJA induced 9h	0.469
SRR8749030	Uninduced	0.552
SRR8749031	Uninduced	0.429
SRR8749032	Uninduced	0.412

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.639
SRR8400027	Control - Root	7.179