Gene detail

Gene detail information of Glyur001772s00032258

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G20150.1	Kinesin motor family protein
NR	AES70498.2	kinesin motor domain protein [Medicago truncatula]
Swissprot	tr\|Q9LDN0\|KN12A_ARATH	Kinesin-like protein KIN12A
trEMBL	tr\|G7J1I5\|G7J1I5_MEDTR	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}

Sequence

Transcript Sequence

>Glyur001772s00032258.1
ATGAAGCAAAAGAGCAACAACGGAGACAGTGGTTTCTTAGGAANCTTCTCTTCCTCTTCCATCAGAAGCCTTCTTCCCATTCGCAAAACCACTTCTTCAAACCCCAAAACCGACTTGGAAAACACTCCCCCCACCCATCCAAACATTCCCGTCAACCATCACCTCCATTCACACCCCAAAACCCCATTTTCTCACAACGACCCACCTGTTGTGGTGAGAATTAGACCTGAAAATAGCAATGGGAAAGAGGGAGATTGGAGAATTAANAAGGTTTCTTCTGATGCCTTGTGTGTTGGGGACAGGCAGTTCAAATTTGATAAAGAAGATGTTTTTCTGTCAGTGGGTGTTCCCTTGGTTAGAAATGCTTTAGCTGGTTACAACACTTCAATTCTGTCATATGGCCAGTATGGAAGTGGAAAGACTTATACAATGTGGGGTCCACTGAGTGCCATGGTTGANGAGCCCTCACGTCATAGTCAACAGGGAATTGCTCCTCGGATCTTCCGAATGTTGTTTTCTGAGCTTGAGAGAGAGAGACTTATGTCTGACCAGAAACAGTTCAGCTATCAATGCCGTTGTTCTTTTATTGAGATAAACAATGAACAAATCGGGAATTTACTCAACCCAACCCAGCAGAATCTTGAGATGAAGGAAGATTCAAAAAATGCATTCTATATTGAGAATCTGATTGAGGAATACGTCACATGCTATGATGACGTGGCACAAATTCTGATTAAGGGCCTTTCAAGCAGAAAAATTGGAGCAACGAGCTTAAATTCTAATAGCTCCAGATCACACGTCATTTTCACTTTTGTCATTGAGTCTTTGTGTAAGGGGACCACAAAGGGTTTCAGTAGTTCAAAAGCTAGCAGAATCAACATTATTGATCTTGCTGGACTGGATAGGGATGAAGTTGACGATGGAAGCAGCCATTGTCTAAGGGAAAGCAGACATGTAAAGAAATCATTATCTCAGCTTGGGCACTTGGTGGATGCTCTGATTGACAAATCTCAGTCTGGAAAAAATGAAGACATTCCNTACAGAAACTCCTGTTTGACACGTTTACTACAAGAATCACTTGGTGGAAATGCCAAACTCTCAGTAATATGTTCCATCTCCCCGGATAACACGAGTAATGATGAAACACTATGCACGCTCAGATTTGGAGAGCAAGTAAGNTCCATTCCAAATAAGCCAGTTATTAATGTAGTAAAGCAGGCTGATGATTTGAGTGATAAAATCCGGCACTTGAAGGAAGAACTTATTAGAGCAAAGGCAGATGTTCATAGCTCAGATGGGAGTAAAAATGGATGCTTCCAAGGACATAATGTGCGGGAAAGCCTTAATCAGTTGAGAGTCAGCTTAAACCGCTCTCTACTCCTATCTAACTTAGATAGTGACACTGATGAAGCTGTAAATGTCAGTGAGGATGACATAAGGCAATTACACCATCAAATTGATGAATTAGATAGTTCATGTGAAGGGAATCCAAAAGACACATCTGTCAGTAAAGATNGTGTCCAGTTTTATTCTGTCAAGGAAAATTGTGATGCAGACACAACCATTGATGATGAAATTGAAAAAGNGGAGGTATGCTATGGAAAAACATTGAGTAAGCCATGTCATGAGGACATTGTGGCATCNGCAGTTAACCCTGTATGCACAGGTAACCCTTCAAGGGCAATAAAACCTAGTTTCAGAGAGAGCATTTCAGTCAGTTCATGCAGCCAATTTCCAATACTTGACGGACTTGACGGACCACAGTTGTCTGAGTCTCCAAAATTCAGCAATACCCAAAGGAAAAGTGTGGCTATTTCATCGAGTTATCTTGGAAGTTGGAACAATGTGGCAGAGAGTTCAAATTTTGGGAAAGATGTGTTGGGAAAATCATTGAAACAGGGTGAGCATATGCGACCCTCATTACAGTCAAGCAAAGCTGAGTCCTTGGCAGCAAGCCTTCAGAAGGGATTACAGATAATTGATTACCACCAGCAGAACTCAGCATTAAACAAATCTTCAACTTCATTCTCCTTTGAGCACTTAACTTTGACACCATGTCCAGAAATTGACAAGGTTGAATCTTATGATCAAATAATGCAACGGAAAACTTCTAATGATGAANTAACTGCCACATTCCTTTGTGCATCTTGCCATAAAAAGATATCTAATTGGGATTCCNCTAAGCATTTGGAAAATGTAATGGCAAAATGCATCATGAGAGAGGAGCTTGAGAATGTTTGTAAGGAGCAAGCATCTAGAATTGAGCAACTAAATCAATTGGTGGAGAAATTGAAAGGAGACAAAGAACTGAACTCCATTTCTATGCATGGTCAGTGTGAAGAGTATAACTCAATGAAGGATGAAAACAAGCTTATGAGGGGCACTTCCTCAAATGGCCCTTCACTATATATTATAGAGGAAAAATGTGAAATTAAAGAAGTTCAAGAAGAGTTAGCTCAGAGAGACATCTCTTTTGATTCAACNGAGAAGGAATTACTTCTTGAGGAAATCCGGAGTCTGAGGAGCAAGCTGCAATTATATAGTGATGCACCAGTCAAAAAGTCTACAGACAAACTTAGATCTTCTTTAATGTCAAGGTCCATACAACTGCAAAAAAGTGGTGTATTTTCTCATGATAATGGGAATGAAGAGCTAGAGAATGAAAGACAGAGATGGACAGAAATGGAAAGTGAGTGGATTTGTCTTACTGATGAACTCAGAGCTGATCTTGAGTCCTACCGCCAGCNTGCAGAGAAGTTGGAGACAGATCTGAAGTTAGAGAAGAAGTGCACAGCAGAGATCGATGATGCACTAAAAAGAGCAGTTAACGGGCATGCTAGAATGGTAGAACACTATGCTGATCTACAAGAAAAATATGATGACTTGNTTGCTAAGCATGATGCTATAATGGAAGGGATAGCAGAGGTGAAGAAGGCAGCAACAAAAGCCTCAAAAAAAGGTCANGCACGCTTTGCCAAAGCTCTTTCTGCTGAGCTTTCTGCACTGAGGGTGGAGAGAGAAAGGGAATCAAAATTATTGAAAAAGGAGAACCAGTGTTTAAAGATTCAACTTCGAGACACTGCTGAAGCTGTTCAGGCTGCCGGAGAACTACTTGTTAGACTAAGAGAAGCTGAACAAGCAGCATCATTTGCAGAGGAGAACTTTGCAAATGTGCGACAAGATAATGAAGAGTTAAAAATGCAAATGGAGAAGCTGAAAAGAAAACACAAGACAGAGATTAATACCATGAAGCAGTACCTTACAGAGAGCAAATTACCAGAGTCTGCACTGCAACCACTGTATCGAGAGGATTCTGATGTGACACACAATAATACAACTTCCTCCTATGCTTATGATGATCAGGCATGGAGAGCAGAATTTGGAGCAACATATCAGGAGCATTACTAATTCAACTCTTNTTGGCCATTGATCAGTTTGACAACAGACTGTATATAAGATCATATACCTTCCACCAGTTTGTCTGGCAATAGATTAGATCCTACTT

Protein Sequence

>Glyur001772s00032258.1
MKQKSNNGDSGFLGXFSSSSIRSLLPIRKTTSSNPKTDLENTPPTHPNIPVNHHLHSHPKTPFSHNDPPVVVRIRPENSNGKEGDWRIXKVSSDALCVGDRQFKFDKEDVFLSVGVPLVRNALAGYNTSILSYGQYGSGKTYTMWGPLSAMVXEPSRHSQQGIAPRIFRMLFSELERERLMSDQKQFSYQCRCSFIEINNEQIGNLLNPTQQNLEMKEDSKNAFYIENLIEEYVTCYDDVAQILIKGLSSRKIGATSLNSNSSRSHVIFTFVIESLCKGTTKGFSSSKASRINIIDLAGLDRDEVDDGSSHCLRESRHVKKSLSQLGHLVDALIDKSQSGKNEDIPYRNSCLTRLLQESLGGNAKLSVICSISPDNTSNDETLCTLRFGEQVXSIPNKPVINVVKQADDLSDKIRHLKEELIRAKADVHSSDGSKNGCFQGHNVRESLNQLRVSLNRSLLLSNLDSDTDEAVNVSEDDIRQLHHQIDELDSSCEGNPKDTSVSKDXVQFYSVKENCDADTTIDDEIEKXEVCYGKTLSKPCHEDIVASAVNPVCTGNPSRAIKPSFRESISVSSCSQFPILDGLDGPQLSESPKFSNTQRKSVAISSSYLGSWNNVAESSNFGKDVLGKSLKQGEHMRPSLQSSKAESLAASLQKGLQIIDYHQQNSALNKSSTSFSFEHLTLTPCPEIDKVESYDQIMQRKTSNDEXTATFLCASCHKKISNWDSXKHLENVMAKCIMREELENVCKEQASRIEQLNQLVEKLKGDKELNSISMHGQCEEYNSMKDENKLMRGTSSNGPSLYIIEEKCEIKEVQEELAQRDISFDSTEKELLLEEIRSLRSKLQLYSDAPVKKSTDKLRSSLMSRSIQLQKSGVFSHDNGNEELENERQRWTEMESEWICLTDELRADLESYRQXAEKLETDLKLEKKCTAEIDDALKRAVNGHARMVEHYADLQEKYDDLXAKHDAIMEGIAEVKKAATKASKKGXARFAKALSAELSALRVERERESKLLKKENQCLKIQLRDTAEAVQAAGELLVRLREAEQAASFAEENFANVRQDNEELKMQMEKLKRKHKTEINTMKQYLTESKLPESALQPLYREDSDVTHNNTTSSYAYDDQAWRAEFGATYQEHY

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01772	34959	40680	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007018 microtubule-based movement

cellular_component
GO:0005871 kinesin complex

molecular_function

GO:0003777 microtubule motor activity

GO:0005524 ATP binding

GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001772s00032258.1	PF00225.18	Kinesin	106	395	3.00E-80
Glyur001772s00032258.1	PF06548.6	Kinesin-related	646	1093	7.40E-151

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.903
SRR1783600	control	1.975
SRR1783602	moderate drought stress	1.126
SRR1811619	moderate drought stress	1.064

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.978
DRR006520	Root Summer glycyrrhizin high producing strain	2.061
DRR006521	Root Winter glycyrrhizin high producing strain	0.032
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.217
DRR006524	Root Summer glycyrrhizin low producing strain	1.221
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.820
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.762

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.207
SRR2868004	Drought Stress (root)	2.339
SRR2967015	Control (root)	3.133

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.329
SRR9715740	Leaf	0.036
SRR9715741	Leaf	0.856
SRR9715739	Root	0.146
SRR9715742	Root	0.516
SRR9715743	Root	0.376

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.850
SRR8749028	MeJA induced 9h	7.207
SRR8749029	MeJA induced 9h	5.262
SRR8749030	Uninduced	1.380
SRR8749031	Uninduced	2.352
SRR8749032	Uninduced	1.621

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.059
SRR8400027	Control - Root	3.434