Gene detail information of Glyur001772s00032257 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G55530.3 | 3.00E-88 | Calcium-dependent lipid-binding (CaLB domain) family protein |
| NR | KHN43807.1 | 0 | hypothetical protein glysoja_035660 [Glycine soja] |
| trEMBL | tr|K7MQM3|K7MQM3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G09110.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01772 | 26302 | 27639 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001772s00032257.1 | PF00168.25 | C2 | 59 | 143 | 1.20E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 34.749 |
| SRR1783600 | control | 36.891 |
| SRR1783602 | moderate drought stress | 31.948 |
| SRR1811619 | moderate drought stress | 32.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 64.051 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 59.155 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.615 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.729 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 57.594 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 57.931 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 39.843 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 40.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 120.126 |
| SRR2868004 | Drought Stress (root) | 155.531 |
| SRR2967015 | Control (root) | 151.996 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 53.426 |
| SRR9715740 | Leaf | 55.527 |
| SRR9715741 | Leaf | 75.983 |
| SRR9715739 | Root | 54.494 |
| SRR9715742 | Root | 61.691 |
| SRR9715743 | Root | 58.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 127.633 |
| SRR8749028 | MeJA induced 9h | 55.571 |
| SRR8749029 | MeJA induced 9h | 44.288 |
| SRR8749030 | Uninduced | 24.701 |
| SRR8749031 | Uninduced | 4.434 |
| SRR8749032 | Uninduced | 13.394 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 135.500 |
| SRR8400027 | Control - Root | 109.329 |