Gene detail

Gene detail information of Glyur001771s00034926

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01050.1	2.00E-35	zinc ion binding;nucleic acid binding
NR	XP_007208943.1	8.48E-56	hypothetical protein PRUPE_ppb015526mg, partial [Prunus persica]
trEMBL	tr\|M5W8T0\|M5W8T0_PRUPE	3.00E-56	Uncharacterized protein {ECO:0000313\|EMBL:EMJ10142.1} (Fragment)

Sequence

Transcript Sequence

>Glyur001771s00034926.1
ATGCAAGAACTATTCGCTATTGAGGTCCCTGATGGTCCTGAGAATGCAGACACTACGAAACCTTCTTGCCCGGAAATTCCTTTGTCTGACGAGGAGTGGAATNAGTGGTCCCAACCGTGGCGCAAGACGTTGGTAGCCAAATTGCTTGGCAAGACCGTCAACTTCAAGTCCCTGGAGACAAATATTCGGCATAGGTGGGCAAGGAAAGGGTTTATCAAAATTGTCGACATGGCCGACGGGTATTATCTAGTGTACTTTGCCACCGAGGAAGATTATAACTTTGCTCTCTTCGAAGGTCCGTGGATGATTGCTGACCATTACCTCATTGTCCAGCGTTGGCAGTCTTTCTTCTTGCNAAGCGCAGAGATCTCAAACAAGATTGCAGTTTGGCTAAGGATTCCAAAGCTGCCGCTCGAGTTGTATAATGCGAANTTTCTATGGCGCATTGGTACTACNTTAGGGACGCCTTTGCGGATTGATAGGCTCACCTCGATCCATTCAAGGGGTAAGTACACTCGTATTTGCGTTGAGATTGATCTTAAGATACCACTGTCATCCCACATTATGATCCATGGTCATCAACTCCCTATCGAGTATGAANGCTTGCATCAAATATGTTTTTGTTGTGGCCTTTATGGTCATAAGGCAGATAAGTGCCAGGAAATGCTTGAGCAACCTGATAGTGCTATTGTTCCTACGAGTGCCAACAAATCTGAGGCGCATTTGGAGGCCCACCTAGCGAAGCATGCCGAGTCTACACTTGTCACTCTTGGGCCTTGGAGCATAGCCCATCGAAGGCCTCGCCCAAAGCCGTTGGGAAGTGTAGGGAATTCAAGCAAAGTGAAGGGCAAAGGCCCGGAGATAGTCAACAGGTCTAGTACAAAACCGAAGCAGGATAAGAATCCTGCTAGAANTGTCGGATCCGGTGGTAATTATTCCTCTCAAGGTGGTGCTCGGGTGGAGATGGATGTCGAGAAGCAGCAGGGTGCAGTCATGAGCAAGGGTCTGGCGACAGGTGAGTACTTTCATGGTCCTTCTTCCTTGNCGGTGGGGACTCTTGTTGATATGGAAATAGAAAACTAGACAGCAACTGATATGCAGCCATTCAGAGACTGAGTCTCAACTGCTCGACNAAATGTCCAAATGAATTATCTCTTTTGGAATTGTAGAGGAGCAGGAGGTAGAGAATTTCCTNCTCTAATAAGGGATAGTGCTCGCATTTACAAGCTTGACATGGTTGCCATCTTAGAGCCTCAGGTCAGTGGTGATAGAGCGGACCAAATCATTAAGAGCTTGGGGTTTGCCTCTTCTTTGAAGGTGGATGCTCGTGGCTTCTCTGGTGGGTTGTGGTGTCTTTGGCGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01771	44407	46305	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001771s00034926.1	PF14111.1	DUF4283	36	177	1.20E-29
Glyur001771s00034926.1	PF14392.1	zf-CCHC_4	195	220	1.90E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	6.222
SRR1811619	moderate drought stress	6.124

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.139
DRR006520	Root Summer glycyrrhizin high producing strain	1.361
DRR006521	Root Winter glycyrrhizin high producing strain	0.899
DRR006522	Root Winter glycyrrhizin high producing strain	1.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.205
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.280

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.186
SRR9715740	Leaf	1.787
SRR9715741	Leaf	2.622
SRR9715739	Root	0.929
SRR9715742	Root	3.417
SRR9715743	Root	2.619

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.313
SRR8400027	Control - Root	11.445