Gene detail

Gene detail information of Glyur001768s00038421

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05620.1	7.00E-148	uridine-ribohydrolase 2
NR	ACJ85074.1	0	unknown [Medicago truncatula]
COG	YP_001340398.1	2.00E-79	inosine/uridine-preferring nucleoside hydrolase [Marinomonas sp. MWYL1]
Swissprot	tr\|Q8LAC4\|URH2_ARATH	0	Probable uridine nucleosidase 2
trEMBL	tr\|B7FJZ5\|B7FJZ5_MEDTR	0	Inosine-uridine preferring nucleoside hydrolase {ECO:0000313\|EMBL:AES60051.2}

Sequence

Transcript Sequence

>Glyur001768s00038421.1
ATGGCAACCGATGCCGAACCAAAGAAGATCATAATTGATACCGACCCCGGCATCGATGATGCTATGGCAATATTCCTTGCTCTACGATCACCAGAGGTACAAGTTATTGGACTCACAACTATCTATGGCAATGTTTACACCACCCTGGCTACCAGAAATGCCTTGCATTTGTTGGAGGTTGCGGAAAGAACTGATATACCAGTTGCAGAAGGAACTCATGTTACATTAACTAAAGGAACAAAACTTCGTATTGCAGATTTTGTCCATGGTGCAGATGGACTTGGCAACCAAAATTTTCCTCCACCAATGGGGAAGCCCATTNAAGACTCAGCTGCTGCTTTTTTGGTTCAACAAGCAAAAGCTAACCCTGGAAAAGTCACTGTGGTGGCGTTGGGCCCGCTTACAAATATTGCATTGGCTATACAGATGGACCCGGAATTCACTAAGAACATTGGGCAGATTGTTCTACTTGGTGGAGCTTTTGCAGTAAATGGCAATGTGAATCCAGCTGCTGAAGCGAATATATTTGGTGATCCAGATGCTGCAGATGTTGTATTCACATGTGGCGCAGATGTACTGGCAGTGGGAATAAATGTTACTCACCAAGTTGTATTAACAGGTTCTGATCGAGAAAAGTTGGCAAGTTCAAATGGAAAATTTGCGCAATACTTGAACAAAATCTTGGATGTGTATTTCTCTTACCATCATGAGGCGTACAGCATTAAAGGGGTTTACCTTCATGACCCAACAACGATTCTTGCAGCTGTTGATCCTTCACTNGTGACTTGCATGGAGGGTATTGTTAGAGTCCAAACCAGTGGTATTACAAGGGGACTTACATTACTTTACAACAAACAGAAAAGGTTTGGTGAAATAACTGAATGGTCTAATAAGCCAACAGTGAAGGTAGCTGTGACAGTTGATGCTCCAAGAGTTGTGAAATTGGTCATGGATCGCCTTATGGCTTGAAGTAGCCACGAAGCCATTCAAATATCATTATTGATTCTTGAAGTAGACGGTTTCAATGTTTTAAGCATAACACTATGCTCACTTAAAAGCTGTTTTGTGTTTTGGAGCTCTTTAGCACTATTTTTTACTTTACATTTTCATTTCAATCTCAATGTGAGAGGAAGGATTATTTTGGTCCCTTCTCTTGCTCTCCATGTAAGGCTGCATTTTACTCGTTTCCTTTGTATTCACTAATTAAATTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01768	47138	52097	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001768s00038421.1	PF01156.14	IU_nuc_hydro	7	320	5.40E-87

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.866
SRR1783600	control	8.716
SRR1783602	moderate drought stress	7.352
SRR1811619	moderate drought stress	7.131

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.762
DRR006520	Root Summer glycyrrhizin high producing strain	12.796
DRR006521	Root Winter glycyrrhizin high producing strain	12.897
DRR006522	Root Winter glycyrrhizin high producing strain	12.860
DRR006523	Root Summer glycyrrhizin low producing strain	7.948
DRR006524	Root Summer glycyrrhizin low producing strain	8.249
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.624
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.793

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	54.127
SRR2868004	Drought Stress (root)	46.010
SRR2967015	Control (root)	42.392

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.795
SRR9715740	Leaf	15.732
SRR9715741	Leaf	15.744
SRR9715739	Root	6.063
SRR9715742	Root	9.927
SRR9715743	Root	8.677

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.413
SRR8749028	MeJA induced 9h	23.840
SRR8749029	MeJA induced 9h	15.390
SRR8749030	Uninduced	18.605
SRR8749031	Uninduced	13.561
SRR8749032	Uninduced	8.006

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.398
SRR8400027	Control - Root	25.565