Gene detail

Gene detail information of Glyur001761s00036828

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	2.00E-58	NB-ARC domain-containing disease resistance protein
NR	XP_003613508.1	0	Resistance protein [Medicago truncatula]
COG	YP_005323731.1	5.00E-07	putative lipoprotein [Saprospira grandis str. Lewin]
Swissprot	tr\|Q7XA39\|RGA4_SOLBU	2.00E-83	Putative disease resistance protein RGA4
trEMBL	tr\|G7K8B4\|G7K8B4_MEDTR	0	NBS-LRR type disease resistance protein {ECO:0000313\|EMBL:AES96466.1}

Sequence

Transcript Sequence

>Glyur001761s00036828.1
ATGACAAAAGCCATCATAGAATCGGCAACTGCGCATGCTTGTGCAGACTTGGATTTAGAGCCACTACAAAGAAAACTTGTGGATTTACTGCAAAGAAAAAGATATTTGCTTGTTTTGGATGATGTGTGGGATGATGAACAAGAAAATTGGCAAAGGTTGAAATCTGTATTGCCTATGGAGGAAAGGGAAGAACGAGTAGAGCTTGTGGTCATCGGGAAGGAGATAGTAAAGAAATGTGGGGGAGTGCCTCTTGCAGCAATAGCATTAGGAAGCCTCTTGCGTTTTAAAAGAGAGGCAAAGGAGTGGCTCTATGTCAAGGAAAGCAAGCTATGGAGTTTACAAGGTGAGAACTCTGTCATGCCTGCCTTGAGATTGAGTTACTTGAATTTGCCAGTTAAATTGAGACAATGTTTTGCCTTCTGTGCAATATTTCCCAAAGATGAAATAATAGAGAAGCAATTTCTAATTGAACTTTGGATGGCTAATGGCTTTCTTTCATCCAATGAAATGTTGGAAGCAGAAGATATTGGCAATGAGACAAGAGGTTTGTTGCATTACAGAATGACAGTGGCATTTCTAATGCTTCTCAAGGAACCTGCCATCTCTCCATTTATAGTAAAATTGAGACAATGTTTTGCCTTCTGTGCATTGTTTCCCAAAGATGGAATAATATACAAGGAGTTTCTAATTGAACTTTGGATGGCTAATGGCNTTTTTTCATCCAATGAGATGCTGGAAGCAGAAGATATTGGCAATGAGGTGTGGAATGAATTATACTGGAGATCATTTTTTCAAGACATAAAGACAGATGAATTTGGCGAAACTAATAGTTTCAAGATGCACGACCTTGTTCATGATCTTGCTCAGTCTATTGCAAAAGAGGTTTGTTGCGTTACAAATGACAGTGGCGTTTCTAATGCATCTCAAGGAACCTGCCATCTCTCCATTCACAGGTGGAAGTTACTTGGAGATGTCGATTCAATCCAATTGAACAACGTCAAGTCGTTGAAGATGTTTATAACACAAAACGGTGCTAACTTTGACAAACTCTCACCTCATATTTTAAAGTTAGACTATTGTCAACGTCTCCAAAAGTTGCCNAATNGTTTGATACGNTTGAAAGCTNTACAACTTATATCTTTACGGGNTTGTNATTCCCTNNCAAGCTTGCCGCCCCAAATAGGGAAGTTGACTTCCCTGAAGACTTTAAGCATNTATGTTGTTGGCAAGAAAAAAGGGTCCCTTTTGGCAGAACTAGGACAACTGAACCTTAAAGGAGANCTTCACATCCAGCACATGGAGAGAGTGAAAAGTGTAACGGATGCCAAAGAAGCCAATATGTCGAGTAAGCACCTGAACAAATTGTGGTTGTCATGGGAGAGAAATGATGAGCCTCAATTACAAGAAAATGTTGAGCAAATTCTTGAATCGCTTCAACCTCATACCCAGCAACTCCATTGTTTGNGTGTGGGAGGATATATGGGTGCATATTTTCCACAATGGATGTCTAGTCTTTCTCTCAAAGATTTAACTACTTTAGGGCTTGTGGATTGCAAAAACTGTTTACACCTTCCCCAGTTGTGGAAACTACCTTCTCTGAAGCGTCTAAAAATATCTAACATGAGTCATGTAAGATACCTATGTGAGGAGTCTCCTAATGGTGGAGTTGCAGGAGGTTTAATGGCCTTGAAATCTCTATTCCTGGAGAAGCTGCCAAANCTGATAAGGTTATCAAGGGAGGAGGATGGAGACCACATGTTCCCACGCCTTTCCACACTTGAAATAACTTCTTGCCCTAACTTGTTGGGTTTGCCTTGCCTTCCATCTCTCAATCATCTATATATAGCAGAGAAATACAGTCGAGACTTACCAATTTCAATTCATAAGCTCATCAATCTTAAATTCCTATATTTCTGGCTAAATGAAGAGTTAACTTACTTTCCAAGTGGGATGCTAAGAAAACTCACTTCTCTAGAGATACTGAACTTTTATGGGAACTCCAAACTCGAGCTACTCCCAACTGAAATCATTTACCTTGATTCTCTCCAACAATTGTATATTACCGATTGCCATAGCCTCAAGTCATTGCCAGATGAAGTATTACAAGGATTGCACTCTCTCAAGGNATTAGAAATTCTGGGGTGCCCAAAGTTCAACCTACCAACAGGTTTTCGACACCTAACTTGTCTTGAGAGATTGGCAATTGGCAGCATCTCAGAGGTGGAAGAAGGTTTACTACATGAGGCTTTACAACACATGACTGCCCTTCAATCCTTAAAACTATCTGATCTTCCAAACTTAGAATCCTTGCCTAACTGTTTCGGAAACCTTTGCTCGCTTTACGAATTGGGGATTTATGTGTGTCCCAAGTTGACTTGTCTTCCAACAACCATCCAACACCTTAGTGGTCTGAAAATGCTACGAATTTATGGCTGCCCTCAGTTAGGGAAGCGATGTCGGGAGGAAATAGGAGAGGATTGGCCGAAAATTGCTCATGTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01761	38925	43676	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001761s00036828.1	PF00931.17	NB-ARC	63	168	2.00E-24
Glyur001761s00036828.1	PF13855.1	LRR_8	657	712	9.40E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.457
SRR1783600	control	1.463
SRR1783602	moderate drought stress	1.445
SRR1811619	moderate drought stress	1.337

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.462
DRR006520	Root Summer glycyrrhizin high producing strain	0.400
DRR006521	Root Winter glycyrrhizin high producing strain	0.679
DRR006522	Root Winter glycyrrhizin high producing strain	0.588
DRR006523	Root Summer glycyrrhizin low producing strain	4.869
DRR006524	Root Summer glycyrrhizin low producing strain	4.505
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.511
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.663

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.908
SRR2868004	Drought Stress (root)	4.708
SRR2967015	Control (root)	4.159

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.891
SRR9715740	Leaf	1.310
SRR9715741	Leaf	1.972
SRR9715739	Root	0.292
SRR9715742	Root	0.849
SRR9715743	Root	0.492

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.789
SRR8749028	MeJA induced 9h	1.552
SRR8749029	MeJA induced 9h	0.963
SRR8749030	Uninduced	0.602
SRR8749031	Uninduced	0.393
SRR8749032	Uninduced	0.433

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.866
SRR8400027	Control - Root	1.369