Gene detail

Gene detail information of Glyur001761s00036825

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	1.00E-104	NB-ARC domain-containing disease resistance protein
NR	AES69267.2	0	NB-ARC domain disease resistance protein [Medicago truncatula]
COG	YP_001277443.1	7.00E-09	NB-ARC domain-containing protein [Roseiflexus sp. RS-1]
Swissprot	tr\|Q7XA40\|RGA3_SOLBU	0	Putative disease resistance protein RGA3
trEMBL	tr\|G7IZD1\|G7IZD1_MEDTR	0	NB-ARC domain disease resistance protein {ECO:0000313\|EMBL:AES69267.2}

Sequence

Transcript Sequence

>Glyur001761s00036825.1
ATGGCTGAGGCTGTGATTGAAATTGTGCTTGAGAATTTGAGCTCGCTCATCCAAAAGGAGCTTGGCCTATTTCTGGGTTTCAATCGAGACTTGAAAAGCCTTGCAAGCTTGCTCACTACAATCAAGGCAACTCTTGAAGATGCCGAGGAGAGACAATTCACTGACAGAGCCATAAAGGATTGGCTGCAAAAGCTAAAAGATGCTGCTCACGTCCTGGATGACATCTTGGACNAATGTGCCATTGAAGCAATGGAGTTGGAGTACCGAGGATTCCAGTGTGGACCATCACACAAGGTGCAAAGCTCTTTCTTATCCTCTTTTCATCCCAAGCATCTTGCTTTCCGTTACAAAATTGCTAAGAANATGAAGAGTATAAGAGAGAGGTTAGATGAAATAGCTGAAGAAAAGAGTAAGTTTCATTTGATAGAGACGGTTAGAGAGAGAGGAATTGGAGTCCTTGATTGGCGCCAAANCACCTCCATCATCACTCAACCTCAAGTCTATGGAAGAGATGAAGATAAGAATAAAATTGTGGACTTTTTGGTTGGTCATGTTGCTGATTATACGGATTTATTGGTCTATCCAATAGTGGGTCTCNGTGGACTTGGAAAAACAACACTGGCCCAACTTATCTACAATCATAAGAAGGTAGTCAACCACTTTGAACTGAGAATTTGGGTGTGTGTTTCTGAAGATTTCAGTTTGAAGAGGATGACAAAAGCCATCATAGAATCAGCAACTGGGCATGCTTGTGCAGATTTGGATCTAGACCCACTACAAAGAAAACTTCTGGATTTACTGCAAGGAAAAAGATATTTGCTTGTTTTGGACGATGTGTGGGATGATGAACAAGAAAATTGGCAAAGGTTGAAATCTGTATTGGCATGTGGAGGAAAGGGTACATCAGTTGTTGTTACTACTCGACTTTTGAAGGTTGCATCAATCATGGGAACAATGCCTCCTCATGATTTATCAATACTATCTGATGATGATTGTTGGGAATTGTTTAAACAAAGAGCCTTTAGACCAAATGAGGTAGAACAAGACGAGCTTGTGGTCATAGGGAAGGAGATAGTAAAGAAGTGTGGGGGAGTGCCTCTTGCAGCATTAGCACTTGGAAGTCTCTTGCATTTTAAAAGAGAGAAGATGGAGTGGCTCTATATCAAAGAAAGCAAGCTATGGTGTTTGCAAGGTGAGAACTCTATCATGCCGGCTTTGAGATTGAGTTACTTGAATTTGCCAGTAAAATTGAGACAATGTTTTGCCTTNTGCGCACTGTTTCCCAANGATGAAAGAATAAGCAAGCAGTTTGTAGTTGAACTCTGGACNGCTAATGGCTTTATTTCATCCAATGAAATGTTGGACGCAGAAGATATTGGCAATCAGGCGTGGAATGAATTATATCGGAGATCATTTTTCCAAGATATCGAGACAGATATATTGGGCAAAATTAGTTTCAAGATGCATGATCTCATTCATNATCTTGCTCAATCTNTTGCAGAAGAGGTCTGTTGCATTACAAATGACAATGGCATACCTAGTGTGCCTGAAAGAACCCACCACCTCTCAATTTATAGGACGATTGGGAAAGTCAATTCAATCCNGTTGCATGACATCAAATCATTGAAGACTTGCATTCAAATGAAAAATGGTTATGACACCGTTGATCAACTTCCACCTCATGTATTGAAAGGTCATTCTCTACGGGTGCTTCACTTTGGAAGAATAAAAAAGTTGTCANCTTCAATTGGTCATTTGAAACATCTAAGGTACTTGAATCTTTCTTCGAGTGAATTCAAAACANTTCCAGAATCCCTATGTGAGTTGTGGAATTTGCAGATTTTAAAGTTAGACGATTGTTATTATCTCCAAAAATTGCCTGATAGTTTGATACATTTGAAAGCTCTACATTATCTATCTTTGATGCATTGCTACTCACTGTCAAGCTTGGCCCCCAATATAAGGAAGTTGACNTCCCTAAGGACTTTGAGCCTTTATATTGTTGGCAAGATAAGAGGGTTACTTTTGGCAGAATTAGGTCAACTGAACCTAAAAGGAGAAATTCACATTAAGAATCTGGAAAGAGTAGTAAGTGTAACAGATGCAAAAGAAGCCAATATGTCGAGTAAGCACCTAAACCGATTGCTCTTGTCGTGGGAGAGAAATGAAGAGTCCCAATCACAAGAAAATGTTGAGCAAATTCTTGAAGAGCTTCAACCGCATAACCAACAACTTCAATCTTTAGAAGTTGAAGGATATACAGGTGCCTATTTCCCACAATGGATGTCTAGTCCTTCTCTCAAATATTTAACTTCTTTAGAGCTCACTGATTGCAAGAGTTGTTTACAATTTCCACAGCTGAGGAAACTACCTTCTCTAAAGAAACTATCAATATCCAACATGAGTAATGTAATATACATAGATGGGGAGCCGTATGAGGATGGGGTTGTAGGAGGTTTCCTAGCACTAGAATGCCTTACACTGGAGACGCTGCCAAACCTGACAAGGTTATCAATGGAAGATAGAGAAAACATGTTCCCATGCCTTTCTATACTTGAAATTACTGGATGTCCTAATTTGTTAGGCTTGCCTTGCCTTCCATCTATCAAAGTGCTACTTATCCGCGAGAAATGCAACCAAGATTTGCTAATCTCAATTTATAAACTTCATAGTCTTGAATATCTACAGATACGAGATATTGATCGGCTCTCCATGCTTGAGGCATTACCATCCGAAAGCATTAACCTTAATGCCATCCAATTGACAGTTGAAGTGTTACAACAAGGATTGCGCTCTCTTAGGACATTACATATTATAAGATGCCAAAAGTTCAATGTGTTAGCAAGCTTCCCATACCTAACTTGTCTTGAGAGATTGGAGATTCAGGATTGCTCAGAAATAGAAGGTTTCCATGTGGCTCTACAACATATGACCGCCCTTCGATCGTTAGCATTGTACAAACTTCCAAACCTAGCATCCCTGCCTGATTGCTTCGGAAACCTAGGCTTGCTTCAGAAATTAACTATTTCTGAGTGTCNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGCATTACAAATGACAATGGCATACCTAGTGTGCCTGAAAGAACCCACCACCTCTCAATTTATAGGGACGATTGGGAAAGTCAATTCAATCCAGTTGCATGACATCAAATCATTGAAGACTTGCATTCAAATGAAAAATGGTTATGACACCGTTGATCAACTTCCACCTCATGTATTGAAAGGTCATTCTCTACGGGTGCTTCACTTTGGAAGAATAAAAAAGTTGTCACCTTCAATTGGTCATTTGAAACATCTAAGCTCTACATTATCTATCTTTGATGCATTGCTACTCACTGTCAAGCTTGGCCCCCAATATAAGGAAGTTGACTTCCCTAAGGACTTTGAGCTTCTACAACATATGACCGCCCTTCCATCGTTAGCATTGTACAAACTTCCAAACCTAGCATCCCTGCCTGATTGCTTCGGAAACCTAGGCTTGCTTCAGAAATTAACTATTTCTGAGTGTCCAAACTTGNCGTGTCTTCCAACGAGCATTCAATGCCTTGCTAGTCTGAAAAGCTTGAAAATTGATAGATGGGTTTTGTCAAGGGCTCTTCAGTATGTCAAAGGTGACTTCAGAGCAATAGATACGAAGCCTTGGCTTCAGGGCTTTTATAACTTGGGTGATGCTCAGCTGCATTGCGAGTACTATCCAGTGAGGGATGCTGTCTATGACTATGTAGCAAAACATCGGTATGAATGGTTTGGTAAGGCTGAAGACTGTTTGGTTTTACAAGAGAAAGAGCTGCTTGAGCTTGTGCTTGAGAATTTGAGCTCACTAGTTCAAAAAAATCTTGGCCTATTTCTGGGTTTCGATCAAGACTTGAAAAGTCTTGCCAGCTTGCTCACTACAATCAAGGCAACTCTTGAAGATGCTGAGGAGAAACAATATTCAAACAGAGCCATATAG

Protein Sequence

>Glyur001761s00036825.1
MAEAVIEIVLENLSSLIQKELGLFLGFNRDLKSLASLLTTIKATLEDAEERQFTDRAIKDWLQKLKDAAHVLDDILDXCAIEAMELEYRGFQCGPSHKVQSSFLSSFHPKHLAFRYKIAKXMKSIRERLDEIAEEKSKFHLIETVRERGIGVLDWRQXTSIITQPQVYGRDEDKNKIVDFLVGHVADYTDLLVYPIVGLXGLGKTTLAQLIYNHKKVVNHFELRIWVCVSEDFSLKRMTKAIIESATGHACADLDLDPLQRKLLDLLQGKRYLLVLDDVWDDEQENWQRLKSVLACGGKGTSVVVTTRLLKVASIMGTMPPHDLSILSDDDCWELFKQRAFRPNEVEQDELVVIGKEIVKKCGGVPLAALALGSLLHFKREKMEWLYIKESKLWCLQGENSIMPALRLSYLNLPVKLRQCFAXCALFPXDERISKQFVVELWTANGFISSNEMLDAEDIGNQAWNELYRRSFFQDIETDILGKISFKMHDLIHXLAQSXAEEVCCITNDNGIPSVPERTHHLSIYRTIGKVNSIXLHDIKSLKTCIQMKNGYDTVDQLPPHVLKGHSLRVLHFGRIKKLSXSIGHLKHLRYLNLSSSEFKTXPESLCELWNLQILKLDDCYYLQKLPDSLIHLKALHYLSLMHCYSLSSLAPNIRKLTSLRTLSLYIVGKIRGLLLAELGQLNLKGEIHIKNLERVVSVTDAKEANMSSKHLNRLLLSWERNEESQSQENVEQILEELQPHNQQLQSLEVEGYTGAYFPQWMSSPSLKYLTSLELTDCKSCLQFPQLRKLPSLKKLSISNMSNVIYIDGEPYEDGVVGGFLALECLTLETLPNLTRLSMEDRENMFPCLSILEITGCPNLLGLPCLPSIKVLLIREKCNQDLLISIYKLHSLEYLQIRDIDRLSMLEALPSESINLNAIQLTVEVLQQGLRSLRTLHIIRCQKFNVLASFPYLTCLERLEIQDCSEIEGFHVALQHMTALRSLALYKLPNLASLPDCFGNLGLLQKLTISECXXXXXXXXXVALQMTMAYLVCLKEPTTSQFIGTIGKVNSIQLHDIKSLKTCIQMKNGYDTVDQLPPHVLKGHSLRVLHFGRIKKLSPSIGHLKHLSSTLSIFDALLLTVKLGPQYKEVDFPKDFELLQHMTALPSLALYKLPNLASLPDCFGNLGLLQKLTISECPNLXCLPTSIQCLASLKSLKIDRWVLSRALQYVKGDFRAIDTKPWLQGFYNLGDAQLHCEYYPVRDAVYDYVAKHRYEWFGKAEDCLVLQEKELLELVLENLSSLVQKNLGLFLGFDQDLKSLASLLTTIKATLEDAEEKQYSNRAI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01761	20567	30401	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001761s00036825.1	PF00931.17	NB-ARC	171	451	6.50E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.404
SRR1783600	control	2.398
SRR1783602	moderate drought stress	5.315
SRR1811619	moderate drought stress	5.160

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.068
DRR006520	Root Summer glycyrrhizin high producing strain	3.741
DRR006521	Root Winter glycyrrhizin high producing strain	1.445
DRR006522	Root Winter glycyrrhizin high producing strain	1.395
DRR006523	Root Summer glycyrrhizin low producing strain	2.168
DRR006524	Root Summer glycyrrhizin low producing strain	2.296
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.409
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.367

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.924
SRR2868004	Drought Stress (root)	4.465
SRR2967015	Control (root)	3.566

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.426
SRR9715740	Leaf	4.742
SRR9715741	Leaf	5.417
SRR9715739	Root	0.745
SRR9715742	Root	4.134
SRR9715743	Root	3.843

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.819
SRR8749028	MeJA induced 9h	1.645
SRR8749029	MeJA induced 9h	0.493
SRR8749030	Uninduced	0.224
SRR8749031	Uninduced	0.115
SRR8749032	Uninduced	0.178

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.553
SRR8400027	Control - Root	5.254