Gene detail information of Glyur001761s00036823 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G14470.1 | 5.00E-90 | NB-ARC domain-containing disease resistance protein |
| NR | XP_003599016.1 | 0 | Cc-nbs-lrr resistance protein [Medicago truncatula] |
| COG | YP_001522505.1 | 2.00E-10 | WD repeat-containing protein [Acaryochloris marina MBIC11017] |
| Swissprot | tr|Q7XA40|RGA3_SOLBU | 3.00E-168 | Putative disease resistance protein RGA3 |
| trEMBL | tr|G7IZD1|G7IZD1_MEDTR | 0 | NB-ARC domain disease resistance protein {ECO:0000313|EMBL:AES69267.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01761 | 6540 | 8942 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001761s00036823.1 | PF00931.17 | NB-ARC | 114 | 392 | 3.50E-69 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.736 |
| SRR1783600 | control | 4.742 |
| SRR1783602 | moderate drought stress | 8.840 |
| SRR1811619 | moderate drought stress | 9.185 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.351 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.687 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.635 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.300 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.287 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.851 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.218 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.676 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.686 |
| SRR2868004 | Drought Stress (root) | 10.479 |
| SRR2967015 | Control (root) | 11.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.672 |
| SRR9715740 | Leaf | 13.318 |
| SRR9715741 | Leaf | 21.141 |
| SRR9715739 | Root | 3.306 |
| SRR9715742 | Root | 25.013 |
| SRR9715743 | Root | 22.913 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.982 |
| SRR8749028 | MeJA induced 9h | 8.082 |
| SRR8749029 | MeJA induced 9h | 3.058 |
| SRR8749030 | Uninduced | 1.901 |
| SRR8749031 | Uninduced | 0.552 |
| SRR8749032 | Uninduced | 0.848 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.629 |
| SRR8400027 | Control - Root | 19.612 |