Gene detail

Gene detail information of Glyur001760s00035311

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G17020.1	2.00E-82	senescence-related gene 1
NR	KHN25972.1	0	Codeine O-demethylase [Glycine soja]
COG	YP_006370287.1	3.00E-32	putative iron/ascorbate oxidoreductase [Tistrella mobilis KA081020-065]
Swissprot	tr\|Q39224\|SRG1_ARATH	1.00E-109	Protein SRG1
trEMBL	tr\|I1K3C0\|I1K3C0_SOYBN	6.00E-170	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G26870.1}

Sequence

Transcript Sequence

>Glyur001760s00035311.1
ATGGCATCATCATCATCATCGCAGGCTAGTCATGTCTTTGGGAACACTCGTTGTATTCTTGGTGTGACAGACACCATCATCCAGAAACCAGAAATGGGAATACCCGAAATGTATATTCGCTCAGAACAAGAATCTCCAATTATTCGACCAGATGAAACCACTCCTCCTTTGCCAACAATTCCCGTTTTTGACTTTAAAAGCTTGGTATCTGGAATTTCCAGAGACACTGAACAAGACAAGTTGTACACAGCATGCAAACACTGGGGTTTCTTTCAGGTGGTGAACCATGGTGTTAGCTCTGAGCTGCTTGAGAAGCTGAAACTTGAGATTGAGAATTTTTTCAAGCTTCCGGTTGAAGAGAAAACAAGATACCAAATCAGGCCAGGAGATGTTCAAGGTTACGGAACTGTCATCAGGTGTGAAGATCAAAAACTTGACTGGGGGGACAGATTCTACATGGTGATAAACCCCCTTGAAAGAAGAAAGCCACACCTTTTTCCTCAACTCCCATCATCACTCAGGGATACCTTGGAGTCATACTTGTCAGAGTTGAGGGAACTTGGGATGACACTTCTTGGATTATTGGGAGAAGGCATCAGCATGGAGATGAAGGAAGTGGAGAGGCTATTTGAGGATGGTATGCAGTCAGTGAGGATGACACACTATCCACCATGCCCACAACCAGAGGTAGTTGTAGGACTCACACCCCACTCTGATGCCACTGGCATAACCATACTTCACCAGGTGAATGGAGTGGAGGGTCTTGAGATAAAGAAAGGTGGGGTTTGGGTTCCTGTGACCTTTCTCCCAGGTGCCTTTGTTGTTAATGTTGGAGACATCATGGAGCATCGGGCTACAGTAAACAGAGAAAAAGAGAGGATTTCTATTGCTATGTTCTTCAACCCCAAATTTGAGGCAGAGATTGGGCCTCTGAAAAGTTTAGTAAGTTCTGAAAACCCACCCTTGTTCAAAAGCATGGTGATGGAAGATTACTTCAAAGACTTTTTCTCCCAAAATCTCGATGGGAAGTCACACTTGGAGAAGATGAGGGTTAAAAGCTTTGATATAAAAGATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01760	47872	51250	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001760s00035311.1	PF14226.1	DIOX_N	60	159	1.50E-24
Glyur001760s00035311.1	PF03171.15	2OG-FeII_Oxy	215	302	5.60E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.611
SRR1783600	control	0.715
SRR1783602	moderate drought stress	1.549
SRR1811619	moderate drought stress	1.411

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.139
SRR2868004	Drought Stress (root)	1.128
SRR2967015	Control (root)	0.623

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.247
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.368
SRR9715739	Root	1.681
SRR9715742	Root	1.320
SRR9715743	Root	1.563

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.522
SRR8749028	MeJA induced 9h	0.175
SRR8749029	MeJA induced 9h	0.104
SRR8749030	Uninduced	4.548
SRR8749031	Uninduced	1.473
SRR8749032	Uninduced	8.442

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.210
SRR8400027	Control - Root	7.574