Gene detail

Gene detail information of Glyur001760s00035309

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G17020.1	2.00E-65	senescence-related gene 1
NR	XP_003524845.1	3.29E-137	PREDICTED: protein SRG1-like [Glycine max]
COG	YP_001341292.1	2.00E-22	2OG-Fe(II) oxygenase [Marinomonas sp. MWYL1]
Swissprot	tr\|D4N501\|DIOX2_PAPSO	3.00E-84	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase
trEMBL	tr\|I1K3B8\|I1K3B8_SOYBN	1.00E-137	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G26830.1}

Sequence

Transcript Sequence

>Glyur001760s00035309.1
TTCGTCATATGTTATTTCATTTCACTGCATATTCGCATGTGACTGTAGGCTAGCTAGGACGAGTTGTAGCTATGGAATCAATCTCTCTTTCAGTGCCCTCAGTCCAGGAAATAGCAAAGGAGGCATTGACCACAGTTCCAGATCGTTATGTTCGTCCTCTTCACGACCGTTCATTAATATTATCATCATCTCCCACCACTAGTACTCCTTTACCTGATCGAGTTCCTGTCGTTGACCTTAGTAAATTGTTGTCCCAAGATGATCTCAAGGGACCTGAGCTGGAAAAGCTACACTCTGCCTGCAAAGAATGGGGCTTCTTTCAGCAGATTAATCACGGAGTGAGCATTTCATTGGTGGAAAATGTGAAGAAGGGTGCTCAAGAATTCTTCAATCTTCCAATTGAAGAGAAGAAGAAGCTGACTGCGGTAGTAGATGATCAGAAACGGTGCAACCTGAGGCGATTCAACAGGCTCTTCCCGGCGATGAGCGTACCGAGGCTATCTGAACTCGAGAATGAAGGAGATGAGGAGGGATATGGTCAGGCCTTTGTGGTATCTGAGGAACAGAAATTGGAGTGGGCAGATATGTTTTTCTTGCTCACTTTGCCATCCCACATGAGCCCCAACCTTCCCTTACCATTCAGGTTCCTCTCTGCCTCTCATACCCTGCACACTTTCCTCACAGTTCCAGAACAAAACAAGGATGATTTAGAGGCCTACTCTGCAGAACTGAAAGAACTTGTGGTCCGAATCCTTGACCTTTTGTCCAACGCCCTAGCATTGGACACCAAGGAAATTAGAGAGTTGTTTGGTGAAGGGACTCAATCAACGAGGATGAGTTATTACCCACCATGTCCCCAACCAGAGCTAGTGATGGGACTCAGTCCTCACTCTGATGGTGGTGGCCTCACTGTCCTTCTCCGAGTCAATGAAGTGGAAGGCCTCCAAATAAAAAAAGATGGGTTGTGGATTCCTGTGAAACCCCTCCCTGATGCTTTCATCATTAACATTGGAGACATGTTGGAGCAGGGGAAGATAAAGGAAGAGGGTTTTTCCATTGTGGAAGAGGAGGAGCAACTAGAAGTGCTTGCCAAGGATAAATCACATGAACTATTTGAGAATGCTTTGGAATTTAAACTCACATCTGAAACCGTGGACTATTGGAGGAGGCTTAGGATGATCAACTTGTGGAATAATAGTACTGCTTGTCTCGACTGGGGGAAGTTTGGGTCCGGCTCCGGCACCAAGCCTTGTTACTCCAATCCAAGTAATCCAGCAGTGTTCAAAAGAGTTAGTGTATCAGAATACCGCAGAGGATACTTGCACGTGAACTCCGTGGGAAATCACACCTCGACCAGAATGAAAATCAGATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01760	32350	37163	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001760s00035309.1	PF14226.1	DIOX_N	51	120	1.90E-19
Glyur001760s00035309.1	PF03171.15	2OG-FeII_Oxy	251	318	7.90E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.934
SRR1783600	control	0.998
SRR1783602	moderate drought stress	2.241
SRR1811619	moderate drought stress	2.047

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.017
DRR006520	Root Summer glycyrrhizin high producing strain	0.034
DRR006521	Root Winter glycyrrhizin high producing strain	0.112
DRR006522	Root Winter glycyrrhizin high producing strain	0.158
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.036
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.521
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.353

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.739
SRR2868004	Drought Stress (root)	10.843
SRR2967015	Control (root)	13.518

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.771
SRR9715740	Leaf	0.271
SRR9715741	Leaf	0.152
SRR9715739	Root	0.031
SRR9715742	Root	0.087
SRR9715743	Root	0.066

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.388
SRR8749028	MeJA induced 9h	0.432
SRR8749029	MeJA induced 9h	0.434
SRR8749030	Uninduced	0.635
SRR8749031	Uninduced	0.162
SRR8749032	Uninduced	0.353

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.593
SRR8400027	Control - Root	0.877