Gene detail

Gene detail information of Glyur001756s00033903

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G28000.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	KHN19953.1	0	Spastin [Glycine soja]
COG	YP_001435580.1	6.00E-42	ATPase [Ignicoccus hospitalis KIN4/I]
Swissprot	tr\|Q9SEX2\|KTNA1_ARATH	1.00E-48	Katanin p60 ATPase-containing subunit A1 {ECO:0000255\|HAMAP-Rule:MF_03023}
trEMBL	tr\|I1MPD2\|I1MPD2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G29040.1}

Sequence

Transcript Sequence

>Glyur001756s00033903.1
AGAGAACCCAGATTTGGTATTATCACCACTCACCACCACCTTGTCAAAAAGAAGCATAGGAAAGTAAAAAATCTCAACTTTCTTTTTTCCTACTTTTCTTTTTGCCTTCCAAATTTTTTTTTTGGGTTCATGGCAAAGCAATAAGCACTTAACGTCCATCAGTTATGCCATGCTATATATAGCATAGAGGAGAGACAAAACACATAGCGAGTCAAAATCCTTCAAACCAACGTTGTCTTCGGAGCCTCCTTTTTAATTTTTACATTGGTTGTTGTTGTTGTTGCTGTTGTTCCAGAATATCCGGGGTGTACCCGTTTCTCTGAATCTTTTGCTTAACAATCTTGATACCCTTTTGTGAAAAGATCGCTTCTTGGGGGGTCTCAAAGGACCAAACTTTTTCTTTTTCTTCTCTCTGTGTTGGATTCATCATCAGGGTTGTGATGGAACAGAAGCACGTTCTGTTGTCAGCATTGAGTGTTGGGGTTGGTTTGGGTGTGGGGCTTGGATTGAGTTCAGGACAGGCTGTGCAGAAATGGGTTGGAATGAATCGTGATTTTGATGAGGTCTCTGGGGAACANATTGTGGAGGAACTCAAGAGAATGATGGTTGATGGAAAAGACAGCAAAATTACATTTGATGAGTTCCCTTATTACTTAAGTGAAAGAACTCGAGTTTTGTTGACAAGTGCTGCATATGTTCATTTAAAACATATGAACTATTCCAAGCACACCAGGAACCTCTCACCAGCAAGCAGGGCTATTTTGCTCTCTGGTCCAGCAGAACTTTACCAGCAAATGCTTGCCAAAGCTTTAGCACATTACTTTGAATCGAAGTTGCTATTGTTAGATATTACCGATTTCTCTGTGAAGTTGCAGAGCAAATTTGGAATTTCTAGAAAAGGACCATCTTTCAAACGGTCAATATCCGAGATGACTTTGGAGCGAATGTCTGGTTTGTTTGGTTCCATGTCAATGCTGCCTTCAACAGGCGAAACTAGAGGAACTCTGNGTCGACAAAGCAGTGGTGTTGAAAGCTCCAATAATCTTCCAAAGCTTAAGAGGAATGCCTCTGCTGCATCTGATTTAAGTAGCACTTCTTCCATGAGTGGTTCAACAATTCCAGCTCCTTTAAGACGCGCAAGTAGCTTGTGTTTTGATGAAAAGCTCTTCGTGCAGTCACTTTACAAGGTTTTGGTTTCTATCTCAGAAACTAATCCCATCATNTTATACATAAGGGATGTTGAGAAGCTTGTTCTCAAATCACCAAGGTTATATAATCTACTACAAAAAATGATAAAGAAGTTGTCAGGCTCGGTGTTGATACTCGGTTCCCATATATTAGATTCAGAGGATGATTGCAAAGAGGTTGATGAAAGGATCACTATGTTATTCCCCTACATCATTGATATCAAACCTCCTGANGATGAAATTCATCTTGGGAGCTGGAAAGGACAACTTGAAGAGGACATGAAGATTATTCAGTTTAAGGATAACAGAAACCACATTGCTGAAGTACTTGCAGCAAATGACATTGACTGTGATGACTTGACTTCAATATGCCATGCAGACACTATGATTCTTAGTAATTATATTGAGGAAATTGTGGTATCGGCAATATCTTACCATTTGATGAATACCAAGGATCCGGAATACCGAAATGGGAAGCTAGTTATATCGGCCAATAGTTTGTCCCATGGATTGAGTCTGTTCCAGGAAGGCAAGAGTAGTGGGAATCTGAAGACTAATGATTCTAACAAGGAAAATGCTGAAGATATTAATGGTGCAAAGAGTGATGCGCGCGGTGACAACCAAGCACCTGAAAACAAAAGTGAGGCAGATAAATCCATCCCTGTAACAAAAAAAGATAGCGAAAATCCTGCACCTGCAAAAGCAGAAGTTCCGGACAATGAGTTCGAGAAGCGCATAAGACCAGAAGTTATCCCTGCAAATGAGATAGGGGTTACATTTGCAGATATTGGAGCAATGGATGAGATCAAAGAATCACTTCAAGAGCTGGTAATGCTTCCACTTAGAAGACCAGACCTCTTCAAAGGTGGGCTTCTAAAGCCATGTAGAGGCATATTGCTTTTTGGTCCTCCTGGTACTGGGAAAACAATGCTAGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTCATCAATGTCTCAATGTCCACCATCACTTCAAAATGGTTCGGAGAAGACGAGAAGAACGTCCGAGCTCTGTTCACACTGGCGGCTAAGGTTGCTCCAACTATCATCTTTGTTGATGAGGTTGACAGCATGCTTGGGCAGAGGACTAGAGTTGGAGAGCATGAGGCAATGAGGAAGATCAAAAATGAATTCATGACACACTGGGATGGGNTATTAACAGGACCTAATGAGCAAATTCTGGTTCTTGCTGCAACCAACAGGCCTTTTGACCTTGATGAAGCAATTATAAGACGGTTCGAGCGCAGGATCATGGAAAAGAAGAAAAAAGAGGCAGAAGAAGGACAAAGCTCGGAAGATGCTTCAAATAATAAAGATAACGAAGCCCAAGAAATTACCCTGAGGCCGTTAAACATGGAAGACATGAAACAGGCTAAGAGTCAGGTGGCCGCGAGTTTTGCGGCCGAAGGAGCAGTAATGGCTGAGCTGAAGCAGTGGAATGATTTNTATGGAGAAGGGGGTTCAAGGAAGAAACAGCAGCTCACATACTTTCTCTAGATTGTGGAATGCTTACATTTTCATATTTTGGATTTGTCACTCCATTCTTCCCAAAAGGATATAACTTTTAACCAAAAAAAGGAAGGAGTCCTAAACTAGAGAGATGTTGAATCCAAAGCATGATTGCCCCAAGTGTTCCACAGATCATCAAAGGCAANGAGATCTTTCTATCATTTCCCACAAGAGCACAAGTCAGGGCACATATATGCATCATTATGCATCATGTTTAGGAGAGGGCTACAAGCCAATGACCAAAACCACATGTATTAGGAGATTTGTATTCTGTGTCATGTGTGGTTTTGGAAGGTGCAATGGCTTTGTAGGAAGTAGGAATATTTTTACACCAAAACCTTTTAGGTAATTATTATGTTGTATTATATTATGATCAGAATTTTTCAGACAGTAGAATTCTGTACATTGATTGTGTAGTAGCCGAACTGCTCAAAAGTTTGCTTCAATTATTATTTTATGTGAATTTGTCTTGCATTACATGACANCCAAATTGTCTTTAAACTGAAATTAAATATCTAGGTGAAAGTGATACGATGCTTGCTGGACCACCTAGTGCAGCTGGACCTTCAGTAGATGGACCCAAGGCTGTTGAGAGGCCCAAGAGAAACCTGTGCAAACCAGGCCATTTGAGTGACTGTGTCTAAGTTCAGATAGCNTATATCAGAACGAACAAAAAAAAAGTTTGACCAAAAAAAAAACGAACAAAAAAAAAAAAGAATAGCATATATCAGAAAGGGAGAAGGGGTCGATTAAAATGGGTAAATCACTGTTGCGCTTTCATTCATTAGGAGTTCTCCTTTAAATAGAGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01756	19652	28782	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001756s00033903.1	PF00004.24	AAA	547	674	1.10E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.375
SRR1783600	control	15.543
SRR1783602	moderate drought stress	9.320
SRR1811619	moderate drought stress	9.571

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.968
DRR006520	Root Summer glycyrrhizin high producing strain	12.004
DRR006521	Root Winter glycyrrhizin high producing strain	19.207
DRR006522	Root Winter glycyrrhizin high producing strain	18.852
DRR006523	Root Summer glycyrrhizin low producing strain	20.469
DRR006524	Root Summer glycyrrhizin low producing strain	21.667
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.259
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.272

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.291
SRR2868004	Drought Stress (root)	51.922
SRR2967015	Control (root)	48.132

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.149
SRR9715740	Leaf	1.703
SRR9715741	Leaf	4.157
SRR9715739	Root	1.335
SRR9715742	Root	12.629
SRR9715743	Root	10.524

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.728
SRR8749028	MeJA induced 9h	13.334
SRR8749029	MeJA induced 9h	9.576
SRR8749030	Uninduced	24.257
SRR8749031	Uninduced	34.874
SRR8749032	Uninduced	16.419

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.033
SRR8400027	Control - Root	19.547