Gene detail

Gene detail information of Glyur001754s00041413

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38600.1	6.00E-84	HAD superfamily, subfamily IIIB acid phosphatase
NR	XP_003548333.1	9.55E-143	PREDICTED: acid phosphatase 1-like [Glycine max]
COG	YP_004217721.1	2.00E-26	acid phosphatase (class B) [Granulicella tundricola MP5ACTX9]
Swissprot	tr\|P27061\|PPA1_SOLLC	1.00E-61	Acid phosphatase 1 (Precursor)
trEMBL	tr\|I1MQP6\|I1MQP6_SOYBN	4.00E-143	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G34700.1}

Sequence

Transcript Sequence

>Glyur001754s00041413.1
TCTATATATTATTTATCTTCAAGTACCCTTCTTGGCAATGGCATGAATTGTGGGTCAATCTTTTAATCAGCGTCTCCGGCTTTAATTGAGTACAGGAAAGCTTGTTACAAGCAGGAACAAGCAGCAGGGAGGGAGTGTATGGCGCGAAGAGTAGGAGAGGTGTTAGTAGTGTTGATCATGTTATTATTGTTGGCAGTACCGAATTCGAAGGCAATGGGCATAAGACATAGAAAAAGGAGTGAGGATTCTGATTCTAGTAGTAGTGATGGGGACAAAGGAGGGTTTTGCTTGAGTTGGAGACTGGGTGTAGAGGNAAACAATGTGGTTGCGTGGCCGACAATCCCACCTCAATGTTCCCGATATGTCGAGACTTACATGATCGGCGGTCAGTATGACCGNGACTTGGAATTAATAGTCCAACAAATCTTGGGTTATCTCAACCACACTTCCCTCCTTGGTGATGCCATGGATGCTTGGATTTTGGATGTTGATGACACTTGCATCTCCAACATCTACTATTACAAAAGCAAAAAATATGGGGGTGAACCGTATGACCCGTCAGGATTCAGGGCATGGGCAACGAAAGGGGGGTGCCCTGCAATTCCTTCCATACTAGAGCTATTTAACAAATTATTGGACAAAGGATTTAAAGTGTTTCTACTTACCGGAAGGGATGAAGAGACTCTTGGCCAAGTTACCAAGGACAACTTGCACAATCAAGGATTCATTGGCTATGAGCGCCTTATTTTGAGGAGTGGTGTATACAAGGGGAAAAGTGCAGTGAAATACAAATCAGATATACGAAAACAATTACAAGATGAAGGTTACAGGATATGGGGGAACGTGGGAGACCAGTGGAGTGATCTCCAGGGAAACTACATGGGCAATCGTACTTTCAAGCTACCCAATCCCATGTACTTCGTTCCCTAGCCAATTGTGTCTTGTAAAATAGAGTTCGGGCCGACAACTGTACTATATAGTCCTATATATATCTATAAGCCAAGTTAGAAAATGATGTTATGATCGTATAGCAAAAATGCCAGCATTCAAACTATGGGTATGCAATCGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01754	43735	49803	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003993 acid phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001754s00041413.1	PF03767.9	Acid_phosphat_B	45	262	1.40E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.378
SRR1783600	control	4.350
SRR1783602	moderate drought stress	1.218
SRR1811619	moderate drought stress	1.201

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.053
DRR006520	Root Summer glycyrrhizin high producing strain	4.992
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	3.600
DRR006524	Root Summer glycyrrhizin low producing strain	3.640
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.964
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.855

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.006
SRR2868004	Drought Stress (root)	6.041
SRR2967015	Control (root)	2.982

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.929
SRR9715740	Leaf	0.059
SRR9715741	Leaf	1.413
SRR9715739	Root	7.861
SRR9715742	Root	20.935
SRR9715743	Root	17.535

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.706
SRR8749028	MeJA induced 9h	1.941
SRR8749029	MeJA induced 9h	0.824
SRR8749030	Uninduced	0.712
SRR8749031	Uninduced	0.428
SRR8749032	Uninduced	0.121

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.516
SRR8400027	Control - Root	21.911