Gene detail information of Glyur001754s00041411 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G09500.1 | 9.00E-56 | Ribosomal protein S19 family protein |
| NR | AFK41893.1 | 1.88E-74 | unknown [Lotus japonicus] |
| COG | YP_003650076.1 | 2.00E-34 | 30S ribosomal protein S19 [Thermosphaera aggregans DSM 11486] |
| Swissprot | tr|Q945U1|RS15_ELAOL | 3.00E-73 | 40S ribosomal protein S15 |
| trEMBL | tr|I3SNQ1|I3SNQ1_LOTJA | 7.00E-75 | Uncharacterized protein {ECO:0000313|EMBL:AFK41893.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01754 | 13622 | 13975 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001754s00041411.1 | PF00203.16 | Ribosomal_S19 | 20 | 101 | 4.80E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.103 |
| SRR1783600 | control | 0.516 |
| SRR1783602 | moderate drought stress | 0.598 |
| SRR1811619 | moderate drought stress | 1.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.079 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.516 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.257 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.919 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.770 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.934 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.050 |
| SRR2868004 | Drought Stress (root) | 0.488 |
| SRR2967015 | Control (root) | 1.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.089 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.139 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.554 |
| SRR8749028 | MeJA induced 9h | 8.694 |
| SRR8749029 | MeJA induced 9h | 8.748 |
| SRR8749030 | Uninduced | 4.570 |
| SRR8749031 | Uninduced | 2.387 |
| SRR8749032 | Uninduced | 7.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.343 |
| SRR8400027 | Control - Root | 0.157 |