Gene detail information of Glyur001752s00036788 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G12587.1 | 4.00E-13 | Oligosaccaryltransferase |
| NR | XP_006378723.1 | 1.13E-19 | hypothetical protein POPTR_0010s21410g, partial [Populus trichocarpa] |
| Swissprot | tr|C7J4U3|OST4A_ORYSJ | 1.00E-19 | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A |
| trEMBL | tr|U5FZG4|U5FZG4_POPTR | 4.00E-20 | Uncharacterized protein {ECO:0000313|EMBL:ERP56520.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01752 | 33794 | 38769 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001752s00036788.1 | PF10215.4 | Ost4 | 51 | 84 | 2.10E-17 |
| Glyur001752s00036788.2 | PF10215.4 | Ost4 | 51 | 84 | 2.10E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 64.309 |
| SRR1783600 | control | 66.483 |
| SRR1783602 | moderate drought stress | 46.370 |
| SRR1811619 | moderate drought stress | 44.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 92.432 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 99.016 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 61.535 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 60.963 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 68.907 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 59.101 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.716 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 125.151 |
| SRR2868004 | Drought Stress (root) | 101.584 |
| SRR2967015 | Control (root) | 89.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 49.228 |
| SRR9715740 | Leaf | 48.831 |
| SRR9715741 | Leaf | 51.834 |
| SRR9715739 | Root | 24.296 |
| SRR9715742 | Root | 34.918 |
| SRR9715743 | Root | 31.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 82.443 |
| SRR8749028 | MeJA induced 9h | 37.307 |
| SRR8749029 | MeJA induced 9h | 70.519 |
| SRR8749030 | Uninduced | 36.530 |
| SRR8749031 | Uninduced | 38.035 |
| SRR8749032 | Uninduced | 43.740 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 140.116 |
| SRR8400027 | Control - Root | 137.155 |