Gene detail

Gene detail information of Glyur001752s00036787

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28780.1	2.00E-145
NR	XP_003625490.1	0	p-hydroxybenzoic acid efflux pump subunit aaeB [Medicago truncatula]
trEMBL	tr\|Q2HT93\|Q2HT93_MEDTR	0	P-type trefoil, putative {ECO:0000313\|EMBL:ABD32899.1}

Sequence

Transcript Sequence

>Glyur001752s00036787.1
ATGTCAGAAACAACAACCACCACAATTGCTAACACAAGGTCAGAATTGTGGCTAGCTCGCCTTGGCTCTGCTCTAAGAACAACCTTAGCATGCAGCATAGTAGCATGCACTTCCCTATATGGCCCTGAACCTCTNAGGCGCTACCTTGAGTTCCCAGCTTTTTCTTATGTGACAACAATCCTCATAGTGTCAGATTCAACACTNGGTGACACCCTCAGAGGTTGTTGGCATGTTCTTTTTGCAACCCTTCAGGCCATGATCCTCTCCCTACTTACCCTGCAGGTGATAAGGCCTGAAAACTTCACCGAAGGCGTGGCTGCGGTTGCAGTTGCGGCTAGNGCCTTCGTGGTGGCACTGCCAGAATCAACCCACTTGTTGACTAAGCGGATTGCATTTGGACAGCTTGTGATTGTTTACGTGAGCACGGTGATACATGGTGCACAAGCAGGAGTGACCGTGCACTCAATTCATGTGGCTTGCTCCACTGCCCTTGGAGCTCTGGCTTCTGCAAGAAAGTTCTACCGATTATACGCTGGGAATACCTATGAGAGGTTAAATTGCAACATGGAGGCCATCTGTGCCACAGATAACTCAACTGCTGTTGGTTTTTTAACTCGAGCAAAGTACCTCTCCACAACAGGAGCCAAGCTTCTCCAGAGTATCAGAAGTAAACTGGATGGCATACACTGGGAACGACCTCAAATGAGATTTTTCAATTCCCATTGCATTGACCCAGAAGAAAAACTGCAAGACTTGGAGATACCAATAAGAGGGATGGACATTGCCCTGTCAAGTTGCATTTCTTTTCCTGTTGGTGTCATTGATGAGGAGCTCAGAGGTGTTTTGCTCAATTGCAGAGGNCAATTCAGCCAAAAATTAGATCAGCAAGCCAAGGGCTTTGTTCCTTTTGATGCAAAGACAACTCCAGAAATGAAAGAAAAAATTTTCAACAAATTCATTTCCACAGCCTACAAAGATCTGCCAACCTCATTCTTTTTATACTGTGTGCAACTTCTCCTAGATGACTCGCCCATTGCAAAGAAAACAGACCACAGGCCCAAAAAAACTCAGGAAAGTGGTGATTCCCAATGGAGCTCCAGCAAGATCAAAGAGCTTTTGATGAACTTGATTCCCAGCAGCAACAGCTTGACCTTTGCATTCAAGTCCTCGCTGTCATTAGGCCTTGCTGTGTTATTTGGTTTGATATACAACAAGGAAAATGGATATTGGTCAGGACTCACAATTGCCATCAGTTTCGTGACTGGACGGCAACCAACATTCTCAGTTGCAAATGCACGAGGACAAGGAACAGCANTGGGATCAATCTATGGAATCCTTTGTTCCTTCATTTTCCAAAGATTTGTGGACTTAAGGTTCTTAACTCTTATACCATGGGTCGTTTTCTCTTCTTTTCTTAGGCATAGCAGAATGTATGGCCAAGCTGGGGCAATTTCAGCAGTGATAGGGGCCTTATTGATCCTTGGTAGGATGCACTATGGCCCTCCAAGTCAATTTGGAGTTGCTAGAATCGCCGAGGCCACAATAGGACTCATTTGCTTCATCATTGTAGAGATTATTTTAAGTCCCTCGAGAGCTGCAACTCTAGCAAAATCTGAACTTTCTCAAAGCCTGAGAGCACTTCAAGATTGCATTGGGCAGATTGCCCTTATTGCTCATAGCAAAAGAGATATTCCATCTTCAAGTTATCAAGCACTGAGAGAAGAACAGAAGAAACTGAAATCTATTGTGTGTCAATTAGAAGAATTTACAGCAGAAGCTGAGATGGAGCCAAATTTCTGGTTCCTTCCATTTCATAGTGCCTGCTACAGTAAGATGCTGGGATCACTATCAAGGATGGTAGATCTCTTGCTTTTTGTGGCATACTCAATGGAACANGTCACACGATTGTCACAGAAAGATGGAGTAATTTGGATGGAACTCCAAGATCGAGTGAATGAGAATGTGAAGATTTTTAAGAACAAAGTTGACCCCATACTGAAATGCCTAGAAGAGATAACAAGGATAAAGTCTTCTAAGAAACTTGAAAATGAGTGGAAGAACATAAATATTCCTCATGATTTTGAGTCACAAGTATATCCCAATGCAGATGCATTTAGGATCTTGAGTAGAGATGAAGAGGTCGATAGCATTACAAGCTCTTTCCTCCAACATCTAGAGGAAATGGCTAATAAAACTCATACCAACAAAGATGAAGAGATGCTTAAAGTTCAGATGCTTTTTCACTGCAGTTGCTTGGGATTCTGCACTAGTAGCTTGATGGGAGAAACAATAAAGATTGAGGGTGAAGTAAAAGAATTACTTATATGGGAGAATCCCTCAAGTCAAACAAACTACAAAGAAATTTACTGTAAGATCAACAACGCTCTGCGTTCATAGTAAATCTAGCACCATGAGTCAAAAATGCCCCTTATAGCCTTGTGAGATTAACTAANAACATGTAGATTGTATGGTATCTTATATAAAATCATCTAATTGGGGGAAAAAGAACAGAAAGAAAAAATGATCCAATTCCAACAACTGATGTTTGAAGCACCCAAAAATGAAAATCCAATACCTGATGTAGCACCAACTNACACTTGAAGAAAGAAATTACCTAATTCTTCAAGGCACGTCAAGTAGCATCAATGCCAAACACATCATCTAGAAAAATCCTCTNACCTTAAAATAAACTTAACATGTTCACTAGTTTCTTAATGAAAGTTCCTTAACCACAAAACATAGCTTATGCAAGCACACACGAGTATAACAAATATTAAAGGGTTGTGCTCCTTTGATGTTTATGAAAGTTTTAGTACCAAGCTAACATTAACATTCCAAAACTAAAGTTCTTGATTATATCAAATCGATTTCCATTTGCAAAGNACCTCAGTCTACAACATGAAAAATTACATCTTCGACTTCAAAGCTTTCCTAGTTTCCTTCATACTTTGGGTCAGCCATAACATAGTGGTATGCTATCACCAGCACAAAGATGAAGACGCCTAGAAAATTGGCAAAGAAACCCAGATCTTGATCATCAATCATCTGTAACATCACAATCAACAAAAATTAACCTACATGAGTGCCCTGCTTTGTGATAACCACAAAAGGATCTACAACAGGAACATCACAAACTAAAATTTATCCTAGTTCCCTCACAAATTTGACCCTGCCATAACAGGGCAGTGTACCCTCAAGAGCACAAATTCGAAAATGCAACAAAAATAGGTAAAGAAAGTAGAAGCCAAATAGCTCGTAAAAGATACTTGGACTTCCCATTGTTGTTTCTGTGGTCACTGGAACAATTAACGTTTAATTTCTCATTATTCTACATGTGCAATGTTGTTGTTTACAATCCAATCTTCAATCCTTATAATTGAAAACTGAAACAGATCGTTGACAAAAGTGATCGGATGCTTCAATATCATTAACATCCCATTATCAGAAGATTAGGAAATTAATATATACACACGGGATAGAAACAAAAATGCACCGATCTGAAAACTGGTAAAGAGGCATATCAAGCAAAATAAGCGATGCATCTGTGAAAACGCAGAATGAGTGTCGGCACAGTGAATTTGTGATGTAGAACAAAAATAAACTGAAAAACAATATGATAATAATAATCTGAAAACGGGAATTGGGGAACGATCTCATCCATGAGAAAAGGNAAGACATCAGAAAGCAAAAAATTGAGAATGAGCAGATGTAATTACCTTCTAACGCGGTGGGTGGAAGTGGGTGTCTCCCCTGTGTCACTTCTTCCTCGGTTGCGTTGTGTTGTTGTCGTGCTTCCTAGGTCTCTCTCTCTCTCTCTCTCTGTTTGGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01752	32586	38699	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0005886 plasma membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001752s00036787.1	PF13515.1	FUSC_2	395	523	2.20E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.270
SRR1783600	control	5.360
SRR1783602	moderate drought stress	3.841
SRR1811619	moderate drought stress	3.215

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.317
DRR006520	Root Summer glycyrrhizin high producing strain	13.583
DRR006521	Root Winter glycyrrhizin high producing strain	7.955
DRR006522	Root Winter glycyrrhizin high producing strain	8.618
DRR006523	Root Summer glycyrrhizin low producing strain	9.466
DRR006524	Root Summer glycyrrhizin low producing strain	9.188
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.181
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.969

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.644
SRR2868004	Drought Stress (root)	14.103
SRR2967015	Control (root)	12.022

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.887
SRR9715740	Leaf	8.594
SRR9715741	Leaf	9.339
SRR9715739	Root	3.863
SRR9715742	Root	4.842
SRR9715743	Root	4.720

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.437
SRR8749028	MeJA induced 9h	5.089
SRR8749029	MeJA induced 9h	8.353
SRR8749030	Uninduced	5.031
SRR8749031	Uninduced	5.343
SRR8749032	Uninduced	4.746

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.856
SRR8400027	Control - Root	19.200